Error executing process > 'NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:MIMSI_ANALYZE (HCC1395_tumor_vs_HCC1395_BL)'

Caused by:
  Process `NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:MIMSI_ANALYZE (HCC1395_tumor_vs_HCC1395_BL)` terminated with an error exit status (1)


Command executed:

  analyze \
      --tumor-bam HCC1395_tumor.recalibrated.bam \
      --normal-bam normal/HCC1395_BL.recalibrated.bam \
      --case-id HCC1395_tumor_vs_HCC1395_BL \
      --save \
      --save-location . \
      --save-format both \
      --name HCC1395_tumor_vs_HCC1395_BL \
      --cores 16 \
      --coverage 100 \
      --confidence-interval 0.95 \
       --microsatellites-list intersection_all_folds_hg38.tsv --model mi_msi_v0_4_0_200x_attn.model --use-attention 
  
  cat <<-END_VERSIONS > versions.yml
  "NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:MIMSI_ANALYZE":
      mimsi: $(analyze --version 2>&1 | sed 's/.*version - //; s/ .*//' || echo 'unknown')
  END_VERSIONS

Command exit status:
  1

Command output:
  (empty)

Work dir:
  s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/37de23360c54e8ff44707339443367

Container:
  292967571998.dkr.ecr.us-west-2.amazonaws.com/sarek/mimsi:0.4.5.1

Tip: you can replicate the issue by changing to the process work dir and entering the command `bash .command.run`