.command.log - Workdir - NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_MERGE:ENSEMBLVEP_VEP (custom_Sig_18_tumor_normal;manta)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/2fae0f04fdb4af746e20fc383261ab/.command.log
Size: 709 bytes
Task: NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_MERGE:ENSEMBLVEP_VEP (custom_Sig_18_tumor_normal;manta)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/2fae0f04fdb4af746e20fc383261ab/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/3fb764a3df4523ef4adb4d222be82b/custom_Sig_18_tumor_normal.manta.somatic_sv_custom.ann_snpEff.ann.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/2fae0f04fdb4af746e20fc383261ab/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/annotation-cache/vep_cache/113_GRCh38
==> STAGING COMPLETE (4 inputs)

2026-05-27 11:25:30 - INFO: Disabling --hgvs; using --offline and no FASTA file found
ls: *.tab.gz: No such file or directory
ls: *.json.gz: No such file or directory