.command.log - Workdir - NFCORE_SAREK:SAREK:VCF_SOMATIC_SNV_INDEL:BCFTOOLS_CONCAT (custom_Sig_18_tumor_normal)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/cd9b9ca7d8e9db86397a6927c0aacb/.command.log
Size: 1.0 KB
Task: NFCORE_SAREK:SAREK:VCF_SOMATIC_SNV_INDEL:BCFTOOLS_CONCAT (custom_Sig_18_tumor_normal)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/e5c4a00d9005fc2169a8a5fda6d197/custom_Sig_18_tumor_normal.snv_indel.tnseq.snv.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a8/cdcf5bf338769c3c761d5f54bc8548/custom_Sig_18_tumor_normal.snv_indel.strelka.indel.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a8/cdcf5bf338769c3c761d5f54bc8548/custom_Sig_18_tumor_normal.snv_indel.strelka.indel.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/cd9b9ca7d8e9db86397a6927c0aacb/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/cd9b9ca7d8e9db86397a6927c0aacb/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/e5c4a00d9005fc2169a8a5fda6d197/custom_Sig_18_tumor_normal.snv_indel.tnseq.snv.vcf.gz.tbi
==> STAGING COMPLETE (6 inputs)

Checking the headers and starting positions of 2 files
ls: custom_Sig_18_tumor_normal.snv_indel.merged.vcf.gz.csi: No such file or directory