cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample HCC1395_BL --max_event_count 5 -v HCC1395_BL.tnseq_tumor_only.vcf.gz --contamination HCC1395_BL.tnseq_tumor_only.contamination_data.tsv --tumor_segments HCC1395_BL.tnseq_tumor_only.segments --orientation_priors HCC1395_BL.tnseq_tumor_only.orientation_data.tsv HCC1395_BL.tnseq_tumor_only.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:224000001, elapsed 0.0s, est remaining 0.7s, peak mem 286MB, user 0.1s, sys 1.0s, output queue size 138
progress 10% @chr2:130000001, elapsed 0.1s, est remaining 0.5s, peak mem 286MB, user 0.2s, sys 2.8s, output queue size 299
progress 15% @chr3:56000001, elapsed 0.1s, est remaining 0.5s, peak mem 286MB, user 0.3s, sys 4.8s, output queue size 461
progress 20% @chr4:14000001, elapsed 0.1s, est remaining 0.4s, peak mem 286MB, user 0.4s, sys 6.9s, output queue size 623
progress 25% @chr4:175000001, elapsed 0.1s, est remaining 0.4s, peak mem 286MB, user 0.5s, sys 8.8s, output queue size 769
progress 30% @chr5:147000001, elapsed 0.1s, est remaining 0.3s, peak mem 286MB, user 0.6s, sys 10.9s, output queue size 931
progress 35% @chr6:129000001, elapsed 0.2s, est remaining 0.3s, peak mem 286MB, user 0.7s, sys 12.8s, output queue size 1091
progress 40% @chr7:121000001, elapsed 0.2s, est remaining 0.3s, peak mem 286MB, user 0.8s, sys 14.7s, output queue size 1252
progress 45% @chr8:119000001, elapsed 0.2s, est remaining 0.3s, peak mem 286MB, user 0.8s, sys 16.8s, output queue size 1415
progress 50% @chr8:128000001, elapsed 0.2s, est remaining 0.2s, peak mem 286MB, user 0.9s, sys 18.8s, output queue size 1576
progress 55% @chr11:23000001, elapsed 0.3s, est remaining 0.2s, peak mem 286MB, user 1.0s, sys 20.8s, output queue size 1737
progress 60% @chr12:51000001, elapsed 0.3s, est remaining 0.2s, peak mem 286MB, user 1.0s, sys 22.8s, output queue size 1899
progress 65% @chr13:84000001, elapsed 0.3s, est remaining 0.2s, peak mem 286MB, user 1.1s, sys 24.9s, output queue size 2061
progress 70% @chr15:9000001, elapsed 0.3s, est remaining 0.1s, peak mem 286MB, user 1.1s, sys 27.0s, output queue size 2223
progress 75% @chr15:61000001, elapsed 0.4s, est remaining 0.1s, peak mem 286MB, user 1.2s, sys 28.9s, output queue size 2385
progress 80% @chr18:63000001, elapsed 0.4s, est remaining 0.1s, peak mem 286MB, user 1.3s, sys 30.7s, output queue size 2458
progress 85% @chr21:3000001, elapsed 0.4s, est remaining 0.1s, peak mem 286MB, user 1.4s, sys 32.9s, output queue size 2620
progress 90% @chrX:107000001, elapsed 0.4s, est remaining 0.0s, peak mem 286MB, user 1.5s, sys 34.7s, output queue size 2781
progress 95% @chr21:33000001, elapsed 0.4s, est remaining 0.0s, peak mem 286MB, user 1.6s, sys 36.6s, output queue size 697
progress 100% @HLA-DRB1*11:01:01:1, elapsed 0.6s, est remaining 0.0s, peak mem 287MB, user 1.7s, sys 41.5s, output queue size 3976
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000606a6
  features: 1f8bfbff fffa320b
  extended: f1bf07ab 00407f5a
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) Platinum 8375C CPU @ 2.90GHz
threads: 128 max 128
algo: TNfilter
license: sentieon:TNhaplotyper=128
input file size: 51811
output file size: 43435
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 540 calls 0.000 user 0.000 sys 0.014 real
"predict_filter": 180 calls 0.002 user 0.008 sys 0.023 real
advance: 3219322 calls 0.377 user 18.063 sys 22.553 real
done: 1 calls 0.001 user 0.000 sys 0.002 real
execute: 1 calls 0.003 user 0.001 sys 0.678 real
fetch_ref: 528 calls 0.003 user 0.042 sys 0.412 real
idle: 19865 calls 0.416 user 0.320 sys 190.782 real
init: 1 calls 0.222 user 0.071 sys 0.421 real
overall: 301334528 mem 2.738 user 44.103 sys 2.190 real