succeeded NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet) 5s 4s 0s 0s 0 bytes 95% 81.4 KB 2.3 KB 0 bytes 4.0 KB 1
succeeded NFCORE_SAREK:SAREK:AGGREGATE_VARIANT_QC (variant_qc_aggregation) 18s 15s 0s 2s 15.1 MB 101% 2.1 MB 10.2 KB 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNFILTER (HCC1395_BL) 20s 6s 2s 11s 478.6 MB 3644% 10.3 MB 332.9 KB 0 bytes 25.4 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNFILTER (Sig_18_Blood) 14s 2s 2s 9s 481.6 MB 2147% 13.1 MB 343.1 KB 0 bytes 25.4 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNHAPLOTYPER2 (HCC1395_BL) 40s 12s 6s 21s 420.6 MB 548% 666.5 MB 370.1 KB 0 bytes 8.0 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNHAPLOTYPER2 (Sig_18_Blood) 37s 8s 5s 23s 508.0 MB 880% 775.6 MB 430.4 KB 0 bytes 8.1 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BCFTOOLS_STRIP_FILTER (HCC1395_BL;tnseq) 5s 4s - - 15.5 MB 2213% 124.1 KB 20.8 KB 0 bytes 32.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BCFTOOLS_STRIP_FILTER (Sig_18_Blood;tnseq) 6s 4s - - 12.9 MB 3169% 125.2 KB 20.8 KB 0 bytes 32.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_NORM (HCC1395_BL) 22s 6s 7s 8s 34.1 MB 287% 3.0 GB 204.6 KB 0 bytes 216.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_NORM (Sig_18_Blood) 21s 5s 7s 8s 34.3 MB 287% 3.0 GB 212.6 KB 0 bytes 224.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_SORT (HCC1395_BL) 3s 1s - - 21.8 MB 7134% 568.4 KB 455.9 KB 0 bytes 468.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_SORT (Sig_18_Blood) 4s 3s - - 21.8 MB 6306% 636.9 KB 524.9 KB 0 bytes 536.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_PON:BCFTOOLS_NORM (chip_pon) 25s 6s 9s 9s 46.8 MB 214% 4.0 GB 5.5 MB 0 bytes 5.5 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_PON:BCFTOOLS_SORT (chip_pon) 7s 4s 1s 2s 21.8 MB 1310% 43.8 MB 44.1 MB 0 bytes 44.1 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_GERMLINE:BCFTOOLS_NORM (HCC1395_BL) 22s 5s 7s 9s 34.0 MB 289% 3.0 GB 198.4 KB 0 bytes 208.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_GERMLINE:BCFTOOLS_NORM (Sig_18_Blood) 22s 6s 7s 8s 34.1 MB 287% 3.0 GB 200.9 KB 0 bytes 212.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_GERMLINE:BCFTOOLS_SORT (HCC1395_BL) 3s 1s - - 22.7 MB 8061% 468.3 KB 353.1 KB 0 bytes 360.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_GERMLINE:BCFTOOLS_SORT (Sig_18_Blood) 3s 1s - - 21.3 MB 6637% 476.2 KB 364.0 KB 0 bytes 376.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:PRE_FILTER_CHIP_CANDIDATES (HCC1395_BL) 8s 5s 0s 2s 13.7 MB 1404% 12.7 MB 71.2 KB 0 bytes 88.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:PRE_FILTER_CHIP_CANDIDATES (Sig_18_Blood) 7s 5s 0s 1s 15.6 MB 2936% 12.8 MB 78.8 KB 0 bytes 92.0 KB 1
328 items found |
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