cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample 869_ELU-N1-BDNA-1_B23H3TCLT3_1 --max_event_count 5 -v 869_ELU-N1-BDNA-1_B23H3TCLT3_1.tnseq_tumor_only.vcf.gz --contamination 869_ELU-N1-BDNA-1_B23H3TCLT3_1.tnseq_tumor_only.contamination_data.tsv --tumor_segments 869_ELU-N1-BDNA-1_B23H3TCLT3_1.tnseq_tumor_only.segments --orientation_priors 869_ELU-N1-BDNA-1_B23H3TCLT3_1.tnseq_tumor_only.orientation_data.tsv 869_ELU-N1-BDNA-1_B23H3TCLT3_1.tnseq_tumor_only.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:153000001, elapsed 0.0s, est remaining 0.6s, peak mem 120MB, user 0.3s, sys 0.3s, output queue size 90
progress 10% @chr2:60000001, elapsed 0.1s, est remaining 0.5s, peak mem 120MB, user 0.7s, sys 0.7s, output queue size 149
progress 15% @chr2:223000001, elapsed 0.1s, est remaining 0.4s, peak mem 121MB, user 1.1s, sys 1.0s, output queue size 76
progress 20% @chr3:151000001, elapsed 0.1s, est remaining 0.4s, peak mem 121MB, user 1.5s, sys 1.3s, output queue size 141
progress 25% @chr4:120000001, elapsed 0.1s, est remaining 0.4s, peak mem 121MB, user 1.9s, sys 1.7s, output queue size 88
progress 30% @chr5:99000001, elapsed 0.2s, est remaining 0.4s, peak mem 121MB, user 2.4s, sys 1.9s, output queue size 15
progress 35% @chr6:58000001, elapsed 0.2s, est remaining 0.3s, peak mem 121MB, user 2.7s, sys 2.3s, output queue size 176
progress 40% @chr7:47000001, elapsed 0.2s, est remaining 0.3s, peak mem 122MB, user 3.0s, sys 2.7s, output queue size 195
progress 45% @chr8:61000001, elapsed 0.2s, est remaining 0.3s, peak mem 122MB, user 3.4s, sys 3.1s, output queue size 151
progress 50% @chr9:85000001, elapsed 0.3s, est remaining 0.3s, peak mem 123MB, user 3.9s, sys 3.3s, output queue size 313
progress 55% @chr10:101000001, elapsed 0.3s, est remaining 0.2s, peak mem 123MB, user 4.2s, sys 3.7s, output queue size 267
progress 60% @chr11:108000001, elapsed 0.3s, est remaining 0.2s, peak mem 123MB, user 4.6s, sys 4.0s, output queue size 81
progress 65% @chr13:14000001, elapsed 0.3s, est remaining 0.2s, peak mem 123MB, user 5.0s, sys 4.4s, output queue size 243
progress 70% @chr14:59000001, elapsed 0.4s, est remaining 0.2s, peak mem 123MB, user 5.2s, sys 4.8s, output queue size 404
progress 75% @chr16:20000001, elapsed 0.4s, est remaining 0.1s, peak mem 123MB, user 5.6s, sys 5.2s, output queue size 154
progress 80% @chr18:12000001, elapsed 0.4s, est remaining 0.1s, peak mem 123MB, user 6.0s, sys 5.6s, output queue size 316
progress 85% @chr20:33000001, elapsed 0.4s, est remaining 0.1s, peak mem 123MB, user 6.4s, sys 5.9s, output queue size 96
progress 90% @chrX:31000001, elapsed 0.5s, est remaining 0.1s, peak mem 124MB, user 6.8s, sys 6.3s, output queue size 258
progress 95% @chrY:32000001, elapsed 0.5s, est remaining 0.0s, peak mem 124MB, user 7.2s, sys 6.6s, output queue size 420
progress 100% @HLA-B*39:01:01:03:1, elapsed 0.6s, est remaining 0.0s, peak mem 126MB, user 7.5s, sys 7.7s, output queue size 3844
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000606a6
  features: 1f8bfbff fffa3203
  extended: f1bf07ab 00407f5a
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) Platinum 8375C CPU @ 2.90GHz
threads: 32 max 32
algo: TNfilter
license: sentieon:TNhaplotyper=32
input file size: 3241579
output file size: 2277066
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 65961 calls 5.117 user 0.084 sys 5.437 real
"predict_filter": 21987 calls 1.021 user 0.124 sys 1.325 real
advance: 3219322 calls 0.588 user 2.787 sys 3.998 real
done: 1 calls 0.010 user 0.000 sys 0.017 real
execute: 1 calls 0.003 user 0.000 sys 0.632 real
fetch_ref: 54088 calls 0.281 user 0.154 sys 0.508 real
idle: 188 calls 0.039 user 0.051 sys 55.840 real
init: 1 calls 0.734 user 0.023 sys 1.369 real
overall: 132534272 mem 27.030 user 8.936 sys 2.976 real