cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample Sig_18_Blood --max_event_count 5 -v Sig_18_Blood.tnseq_tumor_only.vcf.gz --contamination Sig_18_Blood.tnseq_tumor_only.contamination_data.tsv --tumor_segments Sig_18_Blood.tnseq_tumor_only.segments --orientation_priors Sig_18_Blood.tnseq_tumor_only.orientation_data.tsv Sig_18_Blood.tnseq_tumor_only.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:120000001, elapsed 0.0s, est remaining 0.7s, peak mem 163MB, user 0.1s, sys 0.5s, output queue size 99
progress 10% @chr2:34000001, elapsed 0.1s, est remaining 0.6s, peak mem 165MB, user 0.2s, sys 1.2s, output queue size 186
progress 15% @chr3:21000001, elapsed 0.1s, est remaining 0.5s, peak mem 165MB, user 0.2s, sys 1.9s, output queue size 348
progress 20% @chr3:187000001, elapsed 0.1s, est remaining 0.5s, peak mem 166MB, user 0.4s, sys 2.6s, output queue size 291
progress 25% @chr4:146000001, elapsed 0.1s, est remaining 0.4s, peak mem 166MB, user 0.4s, sys 3.4s, output queue size 451
progress 30% @chr5:112000001, elapsed 0.2s, est remaining 0.4s, peak mem 166MB, user 0.5s, sys 4.1s, output queue size 613
progress 35% @chr6:61000001, elapsed 0.2s, est remaining 0.4s, peak mem 166MB, user 0.6s, sys 5.0s, output queue size 363
progress 40% @chr7:86000001, elapsed 0.2s, est remaining 0.3s, peak mem 166MB, user 0.7s, sys 5.6s, output queue size 524
progress 45% @chr8:91000001, elapsed 0.3s, est remaining 0.3s, peak mem 166MB, user 0.8s, sys 6.3s, output queue size 686
progress 50% @chr9:107000001, elapsed 0.3s, est remaining 0.3s, peak mem 167MB, user 0.9s, sys 6.9s, output queue size 848
progress 55% @chr10:129000001, elapsed 0.3s, est remaining 0.3s, peak mem 167MB, user 1.0s, sys 7.5s, output queue size 1009
progress 60% @chr11:123000001, elapsed 0.3s, est remaining 0.2s, peak mem 167MB, user 1.1s, sys 8.2s, output queue size 159
progress 65% @chr13:45000001, elapsed 0.4s, est remaining 0.2s, peak mem 167MB, user 1.2s, sys 8.8s, output queue size 321
progress 70% @chr14:94000001, elapsed 0.4s, est remaining 0.2s, peak mem 167MB, user 1.3s, sys 9.5s, output queue size 483
progress 75% @chr16:47000001, elapsed 0.4s, est remaining 0.1s, peak mem 167MB, user 1.4s, sys 10.2s, output queue size 644
progress 80% @chr18:36000001, elapsed 0.5s, est remaining 0.1s, peak mem 167MB, user 1.6s, sys 10.9s, output queue size 806
progress 85% @chr20:3000001, elapsed 0.5s, est remaining 0.1s, peak mem 167MB, user 1.7s, sys 11.5s, output queue size 280
progress 90% @chrX:59000001, elapsed 0.5s, est remaining 0.1s, peak mem 168MB, user 1.8s, sys 12.1s, output queue size 441
progress 95% @chrX:155000001, elapsed 0.5s, est remaining 0.0s, peak mem 168MB, user 1.9s, sys 12.8s, output queue size 657
progress 100% @HLA-DQA1*04:01:02:01:1, elapsed 0.6s, est remaining 0.0s, peak mem 175MB, user 2.1s, sys 14.6s, output queue size 4027
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
signature: 000606a6
features: 1f8bfbff fffa320b
extended: f1bf07ab 00407f5a
amd bits: 2c100800 00000121
brand: Intel(R) Xeon(R) Platinum 8375C CPU @ 2.90GHz
threads: 64 max 64
algo: TNfilter
license: sentieon:TNhaplotyper=64
input file size: 57860
output file size: 46926
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 642 calls 0.002 user 0.000 sys 0.019 real
"predict_filter": 214 calls 0.009 user 0.001 sys 0.013 real
advance: 3219322 calls 0.659 user 6.399 sys 13.381 real
done: 1 calls 0.000 user 0.000 sys 0.003 real
execute: 1 calls 0.005 user 0.003 sys 0.748 real
fetch_ref: 624 calls 0.002 user 0.000 sys 0.008 real
idle: 19670 calls 0.307 user 0.097 sys 85.695 real
init: 1 calls 0.175 user 0.055 sys 0.319 real
overall: 183582720 mem 3.077 user 15.841 sys 2.072 real