.command.sh - Workdir - NFCORE_SAREK:SAREK:VCF_SOMATIC_SNV_INDEL:LABEL_HOTSPOTS (custom_Sig_18_tumor_normal)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/e55010c8cac2beef90e94468f5be1f/.command.sh
Size: 373 bytes
Task: NFCORE_SAREK:SAREK:VCF_SOMATIC_SNV_INDEL:LABEL_HOTSPOTS (custom_Sig_18_tumor_normal)
Attempt

Content

#!/bin/bash -Ceuo pipefail
label_hotspots_vep.py \
    custom_Sig_18_tumor_normal.snv_indel.phased.vep.vcf.gz \
    custom_Sig_18_tumor_normal.snv_indel.hotspot.vcf.gz \
    --definitions hotspot_definitions.tsv

cat <<-END_VERSIONS > versions.yml
"NFCORE_SAREK:SAREK:VCF_SOMATIC_SNV_INDEL:LABEL_HOTSPOTS":
    python: $(python3 --version | sed 's/Python //')
END_VERSIONS