Work Directory

Attempt
1
S3 Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/2fb970847c20e2330736af3f4adbd1

Files (207)

Name Size Modified
.command.begin 6 bytes May 28, 2026 2:43 PM
.command.err 7.1 KB May 28, 2026 2:44 PM
.command.log 22.8 KB May 28, 2026 2:44 PM
.command.out 0 bytes May 28, 2026 2:44 PM
.command.run 36.1 KB May 28, 2026 2:43 PM
.command.sh 282 bytes May 28, 2026 2:43 PM
.command.trace 279 bytes May 28, 2026 2:44 PM
.command.yaml 3.4 KB May 28, 2026 2:43 PM
.exitcode 1 byte May 28, 2026 2:44 PM
multiqc_data/bcftools-stats-subtypes.txt 1.3 KB May 28, 2026 2:44 PM
multiqc_data/bcftools_stats_indel-lengths.txt 1.3 KB May 28, 2026 2:44 PM
multiqc_data/bcftools_stats_variant_depths.txt 32.0 KB May 28, 2026 2:44 PM
multiqc_data/bcftools_stats_vqc_Count_Indels.txt 13.3 KB May 28, 2026 2:44 PM
multiqc_data/bcftools_stats_vqc_Count_SNP.txt 13.3 KB May 28, 2026 2:44 PM
multiqc_data/bcftools_stats_vqc_Count_Transitions.txt 13.3 KB May 28, 2026 2:44 PM
multiqc_data/bcftools_stats_vqc_Count_Transversions.txt 13.3 KB May 28, 2026 2:44 PM
multiqc_data/consequences_all__plot_Coding_consequences.txt 1.1 KB May 28, 2026 2:44 PM
multiqc_data/consequences_all__plot_Consequences_all_.txt 2.7 KB May 28, 2026 2:44 PM
multiqc_data/consequences_all__plot_Consequences_most_severe_.txt 2.3 KB May 28, 2026 2:44 PM
multiqc_data/llms-full.txt 133.6 KB May 28, 2026 2:44 PM
multiqc_data/mosdepth-coverage-per-contig-single.txt 141 bytes May 28, 2026 2:44 PM
multiqc_data/mosdepth-cumcoverage-dist-id.txt 27.4 KB May 28, 2026 2:44 PM
multiqc_data/mosdepth-xy-coverage-plot.txt 117 bytes May 28, 2026 2:44 PM
multiqc_data/mosdepth_cov_dist.txt 21.9 KB May 28, 2026 2:44 PM
multiqc_data/mosdepth_cumcov_dist.txt 21.9 KB May 28, 2026 2:44 PM
multiqc_data/mosdepth_perchrom.txt 141 bytes May 28, 2026 2:44 PM
multiqc_data/multiqc.log 36.2 KB May 28, 2026 2:44 PM
multiqc_data/multiqc.parquet 2.5 MB May 28, 2026 2:44 PM
multiqc_data/multiqc_bcftools_stats.txt 1.9 KB May 28, 2026 2:44 PM
multiqc_data/multiqc_citations.txt 427 bytes May 28, 2026 2:44 PM
multiqc_data/multiqc_data.json 2.4 MB May 28, 2026 2:44 PM
multiqc_data/multiqc_general_stats.txt 3.7 KB May 28, 2026 2:44 PM
multiqc_data/multiqc_samtools_stats.txt 2.8 KB May 28, 2026 2:44 PM
multiqc_data/multiqc_snpeff.txt 8.7 KB May 28, 2026 2:44 PM
multiqc_data/multiqc_software_versions.txt 3.7 KB May 28, 2026 2:44 PM
multiqc_data/multiqc_sources.txt 7.4 KB May 28, 2026 2:44 PM
multiqc_data/polyphen_summary_plot.txt 554 bytes May 28, 2026 2:44 PM
multiqc_data/position_in_protein_plot.txt 965 bytes May 28, 2026 2:44 PM
multiqc_data/samtools-stats-dp.txt 813 bytes May 28, 2026 2:44 PM
multiqc_data/samtools_alignment_plot.txt 189 bytes May 28, 2026 2:44 PM
multiqc_data/sift_summary_plot.txt 579 bytes May 28, 2026 2:44 PM
multiqc_data/snpeff_effects.txt 1.6 KB May 28, 2026 2:44 PM
multiqc_data/snpeff_qualities.txt 5.3 KB May 28, 2026 2:44 PM
multiqc_data/snpeff_variant_effects_class.txt 459 bytes May 28, 2026 2:44 PM
multiqc_data/snpeff_variant_effects_impact.txt 1000 bytes May 28, 2026 2:44 PM
multiqc_data/snpeff_variant_effects_region.txt 1.2 KB May 28, 2026 2:44 PM
multiqc_data/variant_classes_plot.txt 1.3 KB May 28, 2026 2:44 PM
multiqc_data/variants_by_chromosome_plot.txt 1.1 KB May 28, 2026 2:44 PM
multiqc_data/vcftools_tstv_by_count.txt 1.2 KB May 28, 2026 2:44 PM
multiqc_data/vcftools_tstv_by_qual.txt 13.8 KB May 28, 2026 2:44 PM
multiqc_data/vep-general-stats.txt 1.3 KB May 28, 2026 2:44 PM
multiqc_data/vep.txt 15.5 KB May 28, 2026 2:44 PM
multiqc_plots/pdf/bcftools-stats-subtypes-cnt.pdf 13.2 KB May 28, 2026 2:44 PM
multiqc_plots/pdf/bcftools-stats-subtypes-pct.pdf 13.5 KB May 28, 2026 2:44 PM
multiqc_plots/pdf/bcftools_stats_indel-lengths-cnt.pdf 10.7 KB May 28, 2026 2:44 PM
multiqc_plots/pdf/bcftools_stats_indel-lengths-log.pdf 11.2 KB May 28, 2026 2:44 PM
multiqc_plots/pdf/bcftools_stats_variant_depths.pdf 16.9 KB May 28, 2026 2:44 PM
multiqc_plots/pdf/bcftools_stats_vqc_Count_Indels.pdf 12.4 KB May 28, 2026 2:44 PM
multiqc_plots/pdf/bcftools_stats_vqc_Count_SNP.pdf 12.5 KB May 28, 2026 2:44 PM
multiqc_plots/pdf/bcftools_stats_vqc_Count_Transitions.pdf 13.6 KB May 28, 2026 2:44 PM
multiqc_plots/pdf/bcftools_stats_vqc_Count_Transversions.pdf 13.5 KB May 28, 2026 2:44 PM
multiqc_plots/pdf/consequences_all__plot_Coding_consequences-cnt.pdf 13.0 KB May 28, 2026 2:44 PM
multiqc_plots/pdf/consequences_all__plot_Coding_consequences-pct.pdf 13.6 KB May 28, 2026 2:44 PM
multiqc_plots/pdf/consequences_all__plot_Consequences_all_-cnt.pdf 16.7 KB May 28, 2026 2:44 PM
multiqc_plots/pdf/consequences_all__plot_Consequences_all_-pct.pdf 17.1 KB May 28, 2026 2:44 PM
multiqc_plots/pdf/consequences_all__plot_Consequences_most_severe_-cnt.pdf 15.0 KB May 28, 2026 2:44 PM
multiqc_plots/pdf/consequences_all__plot_Consequences_most_severe_-pct.pdf 15.7 KB May 28, 2026 2:44 PM
multiqc_plots/pdf/mosdepth-coverage-per-contig-single-cnt.pdf 11.2 KB May 28, 2026 2:44 PM
multiqc_plots/pdf/mosdepth-coverage-per-contig-single-pct.pdf 11.1 KB May 28, 2026 2:44 PM
multiqc_plots/pdf/mosdepth-cumcoverage-dist-id.pdf 13.2 KB May 28, 2026 2:44 PM
multiqc_plots/pdf/mosdepth-xy-coverage-plot-cnt.pdf 10.9 KB May 28, 2026 2:44 PM
multiqc_plots/pdf/mosdepth-xy-coverage-plot-pct.pdf 11.3 KB May 28, 2026 2:44 PM
multiqc_plots/pdf/polyphen_summary_plot-cnt.pdf 13.4 KB May 28, 2026 2:44 PM
multiqc_plots/pdf/polyphen_summary_plot-pct.pdf 13.6 KB May 28, 2026 2:44 PM
multiqc_plots/pdf/position_in_protein_plot-cnt.pdf 13.5 KB May 28, 2026 2:44 PM
multiqc_plots/pdf/position_in_protein_plot-pct.pdf 13.5 KB May 28, 2026 2:44 PM
multiqc_plots/pdf/samtools-stats-dp.pdf 25.1 KB May 28, 2026 2:44 PM
multiqc_plots/pdf/samtools_alignment_plot-cnt.pdf 12.4 KB May 28, 2026 2:44 PM
multiqc_plots/pdf/samtools_alignment_plot-pct.pdf 12.6 KB May 28, 2026 2:44 PM
multiqc_plots/pdf/sift_summary_plot-cnt.pdf 13.3 KB May 28, 2026 2:44 PM
multiqc_plots/pdf/sift_summary_plot-pct.pdf 13.9 KB May 28, 2026 2:44 PM
multiqc_plots/pdf/snpeff_effects-cnt.pdf 15.7 KB May 28, 2026 2:44 PM
multiqc_plots/pdf/snpeff_effects-pct.pdf 16.1 KB May 28, 2026 2:44 PM
multiqc_plots/pdf/snpeff_qualities.pdf 10.3 KB May 28, 2026 2:44 PM
multiqc_plots/pdf/snpeff_variant_effects_class-cnt.pdf 12.8 KB May 28, 2026 2:44 PM
multiqc_plots/pdf/snpeff_variant_effects_class-log.pdf 13.0 KB May 28, 2026 2:44 PM
multiqc_plots/pdf/snpeff_variant_effects_class-pct-log.pdf 13.0 KB May 28, 2026 2:44 PM
multiqc_plots/pdf/snpeff_variant_effects_class-pct.pdf 13.2 KB May 28, 2026 2:44 PM
multiqc_plots/pdf/snpeff_variant_effects_impact-cnt.pdf 13.9 KB May 28, 2026 2:44 PM
multiqc_plots/pdf/snpeff_variant_effects_impact-log.pdf 13.6 KB May 28, 2026 2:44 PM
multiqc_plots/pdf/snpeff_variant_effects_impact-pct-log.pdf 14.2 KB May 28, 2026 2:44 PM
multiqc_plots/pdf/snpeff_variant_effects_impact-pct.pdf 14.1 KB May 28, 2026 2:44 PM
multiqc_plots/pdf/snpeff_variant_effects_region-cnt.pdf 15.0 KB May 28, 2026 2:44 PM
multiqc_plots/pdf/snpeff_variant_effects_region-log.pdf 14.7 KB May 28, 2026 2:44 PM
multiqc_plots/pdf/snpeff_variant_effects_region-pct-log.pdf 15.3 KB May 28, 2026 2:44 PM
multiqc_plots/pdf/snpeff_variant_effects_region-pct.pdf 15.2 KB May 28, 2026 2:44 PM
multiqc_plots/pdf/variant_classes_plot-cnt.pdf 12.9 KB May 28, 2026 2:44 PM
multiqc_plots/pdf/variant_classes_plot-pct.pdf 13.5 KB May 28, 2026 2:44 PM
multiqc_plots/pdf/variants_by_chromosome_plot-cnt.pdf 12.8 KB May 28, 2026 2:44 PM
multiqc_plots/pdf/variants_by_chromosome_plot-pct.pdf 13.3 KB May 28, 2026 2:44 PM
multiqc_plots/pdf/vcftools_tstv_by_count.pdf 10.6 KB May 28, 2026 2:44 PM
multiqc_plots/pdf/vcftools_tstv_by_qual.pdf 14.6 KB May 28, 2026 2:44 PM
multiqc_plots/pdf/vep-general-stats.pdf 19.6 KB May 28, 2026 2:44 PM
multiqc_plots/png/bcftools-stats-subtypes-cnt.png 183.6 KB May 28, 2026 2:44 PM
multiqc_plots/png/bcftools-stats-subtypes-pct.png 176.2 KB May 28, 2026 2:44 PM
multiqc_plots/png/bcftools_stats_indel-lengths-cnt.png 129.9 KB May 28, 2026 2:44 PM
multiqc_plots/png/bcftools_stats_indel-lengths-log.png 152.2 KB May 28, 2026 2:44 PM
multiqc_plots/png/bcftools_stats_variant_depths.png 196.5 KB May 28, 2026 2:44 PM
multiqc_plots/png/bcftools_stats_vqc_Count_Indels.png 112.1 KB May 28, 2026 2:44 PM
multiqc_plots/png/bcftools_stats_vqc_Count_SNP.png 107.3 KB May 28, 2026 2:44 PM
multiqc_plots/png/bcftools_stats_vqc_Count_Transitions.png 111.7 KB May 28, 2026 2:44 PM
multiqc_plots/png/bcftools_stats_vqc_Count_Transversions.png 111.7 KB May 28, 2026 2:44 PM
multiqc_plots/png/consequences_all__plot_Coding_consequences-cnt.png 212.9 KB May 28, 2026 2:44 PM
multiqc_plots/png/consequences_all__plot_Coding_consequences-pct.png 206.0 KB May 28, 2026 2:44 PM
multiqc_plots/png/consequences_all__plot_Consequences_all_-cnt.png 315.1 KB May 28, 2026 2:44 PM
multiqc_plots/png/consequences_all__plot_Consequences_all_-pct.png 318.6 KB May 28, 2026 2:44 PM
multiqc_plots/png/consequences_all__plot_Consequences_most_severe_-cnt.png 292.9 KB May 28, 2026 2:44 PM
multiqc_plots/png/consequences_all__plot_Consequences_most_severe_-pct.png 294.2 KB May 28, 2026 2:44 PM
multiqc_plots/png/mosdepth-coverage-per-contig-single-cnt.png 67.6 KB May 28, 2026 2:44 PM
multiqc_plots/png/mosdepth-coverage-per-contig-single-pct.png 62.6 KB May 28, 2026 2:44 PM
multiqc_plots/png/mosdepth-cumcoverage-dist-id.png 180.0 KB May 28, 2026 2:44 PM
multiqc_plots/png/mosdepth-xy-coverage-plot-cnt.png 68.1 KB May 28, 2026 2:44 PM
multiqc_plots/png/mosdepth-xy-coverage-plot-pct.png 70.7 KB May 28, 2026 2:44 PM
multiqc_plots/png/polyphen_summary_plot-cnt.png 119.0 KB May 28, 2026 2:44 PM
multiqc_plots/png/polyphen_summary_plot-pct.png 116.1 KB May 28, 2026 2:44 PM
multiqc_plots/png/position_in_protein_plot-cnt.png 158.6 KB May 28, 2026 2:44 PM
multiqc_plots/png/position_in_protein_plot-pct.png 161.0 KB May 28, 2026 2:44 PM
multiqc_plots/png/samtools-stats-dp.png 238.8 KB May 28, 2026 2:44 PM
multiqc_plots/png/samtools_alignment_plot-cnt.png 78.2 KB May 28, 2026 2:44 PM
multiqc_plots/png/samtools_alignment_plot-pct.png 74.3 KB May 28, 2026 2:44 PM
multiqc_plots/png/sift_summary_plot-cnt.png 115.6 KB May 28, 2026 2:44 PM
multiqc_plots/png/sift_summary_plot-pct.png 119.4 KB May 28, 2026 2:44 PM
multiqc_plots/png/snpeff_effects-cnt.png 211.1 KB May 28, 2026 2:44 PM
multiqc_plots/png/snpeff_effects-pct.png 216.5 KB May 28, 2026 2:44 PM
multiqc_plots/png/snpeff_qualities.png 131.4 KB May 28, 2026 2:44 PM
multiqc_plots/png/snpeff_variant_effects_class-cnt.png 109.5 KB May 28, 2026 2:44 PM
multiqc_plots/png/snpeff_variant_effects_class-log.png 110.4 KB May 28, 2026 2:44 PM
multiqc_plots/png/snpeff_variant_effects_class-pct-log.png 109.5 KB May 28, 2026 2:44 PM
multiqc_plots/png/snpeff_variant_effects_class-pct.png 107.1 KB May 28, 2026 2:44 PM
multiqc_plots/png/snpeff_variant_effects_impact-cnt.png 183.4 KB May 28, 2026 2:44 PM
multiqc_plots/png/snpeff_variant_effects_impact-log.png 180.8 KB May 28, 2026 2:44 PM
multiqc_plots/png/snpeff_variant_effects_impact-pct-log.png 179.1 KB May 28, 2026 2:44 PM
multiqc_plots/png/snpeff_variant_effects_impact-pct.png 176.9 KB May 28, 2026 2:44 PM
multiqc_plots/png/snpeff_variant_effects_region-cnt.png 189.1 KB May 28, 2026 2:44 PM
multiqc_plots/png/snpeff_variant_effects_region-log.png 186.0 KB May 28, 2026 2:44 PM
multiqc_plots/png/snpeff_variant_effects_region-pct-log.png 187.0 KB May 28, 2026 2:44 PM
multiqc_plots/png/snpeff_variant_effects_region-pct.png 184.3 KB May 28, 2026 2:44 PM
multiqc_plots/png/variant_classes_plot-cnt.png 192.7 KB May 28, 2026 2:44 PM
multiqc_plots/png/variant_classes_plot-pct.png 193.2 KB May 28, 2026 2:44 PM
multiqc_plots/png/variants_by_chromosome_plot-cnt.png 187.5 KB May 28, 2026 2:44 PM
multiqc_plots/png/variants_by_chromosome_plot-pct.png 180.2 KB May 28, 2026 2:44 PM
multiqc_plots/png/vcftools_tstv_by_count.png 96.3 KB May 28, 2026 2:44 PM
multiqc_plots/png/vcftools_tstv_by_qual.png 164.4 KB May 28, 2026 2:44 PM
multiqc_plots/png/vep-general-stats.png 137.4 KB May 28, 2026 2:44 PM
multiqc_plots/svg/bcftools-stats-subtypes-cnt.svg 49.6 KB May 28, 2026 2:44 PM
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multiqc_plots/svg/bcftools_stats_variant_depths.svg 68.5 KB May 28, 2026 2:44 PM
multiqc_plots/svg/bcftools_stats_vqc_Count_Indels.svg 18.5 KB May 28, 2026 2:44 PM
multiqc_plots/svg/bcftools_stats_vqc_Count_SNP.svg 17.5 KB May 28, 2026 2:44 PM
multiqc_plots/svg/bcftools_stats_vqc_Count_Transitions.svg 21.6 KB May 28, 2026 2:44 PM
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multiqc_plots/svg/consequences_all__plot_Coding_consequences-cnt.svg 30.2 KB May 28, 2026 2:44 PM
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multiqc_plots/svg/polyphen_summary_plot-cnt.svg 17.6 KB May 28, 2026 2:44 PM
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multiqc_plots/svg/snpeff_variant_effects_region-pct-log.svg 38.9 KB May 28, 2026 2:44 PM
multiqc_plots/svg/snpeff_variant_effects_region-pct.svg 37.2 KB May 28, 2026 2:44 PM
multiqc_plots/svg/variant_classes_plot-cnt.svg 31.2 KB May 28, 2026 2:44 PM
multiqc_plots/svg/variant_classes_plot-pct.svg 32.0 KB May 28, 2026 2:44 PM
multiqc_plots/svg/variants_by_chromosome_plot-cnt.svg 24.7 KB May 28, 2026 2:44 PM
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multiqc_plots/svg/vcftools_tstv_by_count.svg 16.5 KB May 28, 2026 2:44 PM
multiqc_plots/svg/vcftools_tstv_by_qual.svg 18.9 KB May 28, 2026 2:44 PM
multiqc_plots/svg/vep-general-stats.svg 99.4 KB May 28, 2026 2:44 PM
multiqc_report.html 2.5 MB May 28, 2026 2:44 PM
versions.yml 48 bytes May 28, 2026 2:44 PM