.command.log - Workdir - NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_MERGE:ENSEMBLVEP_VEP (HCC1395_tumor_vs_HCC1395_BL;strelka)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/e89b619fa9925ae8d518e37c05dc1b/.command.log
Size: 714 bytes
Task: NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_MERGE:ENSEMBLVEP_VEP (HCC1395_tumor_vs_HCC1395_BL;strelka)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/040b85a0210d997e6d9d791345ec5a/HCC1395_tumor_vs_HCC1395_BL.strelka.somatic_snvs_custom.ann_snpEff.ann.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/e89b619fa9925ae8d518e37c05dc1b/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/e89b619fa9925ae8d518e37c05dc1b/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/annotation-cache/vep_cache/113_GRCh38
==> STAGING COMPLETE (4 inputs)

2026-05-28 21:23:12 - INFO: Disabling --hgvs; using --offline and no FASTA file found
ls: *.tab.gz: No such file or directory
ls: *.json.gz: No such file or directory