Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/73ecfcfd9b357068a76f4cb68a1cf8/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/73ecfcfd9b357068a76f4cb68a1cf8/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/466c3bb300a6213c0e6e4ac8f78452/HCC1395_BL.deconflicted_germline_custom.ann_snpEff.ann.vcf.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/annotation-cache/vep_cache/113_GRCh38
==> STAGING COMPLETE (4 inputs)

2026-05-28 22:53:00 - INFO: Disabling --hgvs; using --offline and no FASTA file found
ls: *.tab.gz: No such file or directory
ls: *.json.gz: No such file or directory