cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample Sig_18_Blood --max_event_count 5 -v Sig_18_Blood.tnseq_tumor_only.vcf.gz --contamination Sig_18_Blood.tnseq_tumor_only.contamination_data.tsv --tumor_segments Sig_18_Blood.tnseq_tumor_only.segments --orientation_priors Sig_18_Blood.tnseq_tumor_only.orientation_data.tsv Sig_18_Blood.tnseq_tumor_only.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:141000001, elapsed 0.1s, est remaining 1.1s, peak mem 420MB, user 0.4s, sys 2.6s, output queue size 119
progress 10% @chr2:118000001, elapsed 0.1s, est remaining 0.9s, peak mem 420MB, user 0.8s, sys 7.2s, output queue size 189
progress 15% @chr3:67000001, elapsed 0.1s, est remaining 0.8s, peak mem 420MB, user 1.2s, sys 11.8s, output queue size 351
progress 20% @chr3:180000001, elapsed 0.2s, est remaining 0.7s, peak mem 420MB, user 1.5s, sys 16.6s, output queue size 512
progress 25% @chr1:248000001, elapsed 0.2s, est remaining 0.7s, peak mem 420MB, user 2.0s, sys 21.4s, output queue size 674
progress 30% @chr6:20000001, elapsed 0.3s, est remaining 0.6s, peak mem 420MB, user 2.6s, sys 26.2s, output queue size 835
progress 35% @chr6:97000001, elapsed 0.3s, est remaining 0.5s, peak mem 420MB, user 3.0s, sys 30.9s, output queue size 984
progress 40% @chr6:85000001, elapsed 0.3s, est remaining 0.5s, peak mem 420MB, user 3.4s, sys 35.9s, output queue size 1144
progress 45% @chr9:2000001, elapsed 0.4s, est remaining 0.4s, peak mem 420MB, user 3.8s, sys 40.1s, output queue size 1283
progress 50% @chr8:2000001, elapsed 0.4s, est remaining 0.4s, peak mem 420MB, user 4.0s, sys 44.5s, output queue size 1444
progress 55% @chr11:97000001, elapsed 0.4s, est remaining 0.4s, peak mem 420MB, user 4.2s, sys 47.3s, output queue size 275
progress 60% @chr12:18000001, elapsed 0.5s, est remaining 0.3s, peak mem 420MB, user 4.6s, sys 51.8s, output queue size 436
progress 65% @chr13:48000001, elapsed 0.5s, est remaining 0.3s, peak mem 420MB, user 5.0s, sys 56.3s, output queue size 598
progress 70% @chr14:48000001, elapsed 0.6s, est remaining 0.2s, peak mem 420MB, user 5.5s, sys 61.1s, output queue size 760
progress 75% @chr16:25000001, elapsed 0.6s, est remaining 0.2s, peak mem 420MB, user 5.8s, sys 66.1s, output queue size 922
progress 80% @chr19:14000001, elapsed 0.6s, est remaining 0.2s, peak mem 420MB, user 6.2s, sys 70.8s, output queue size 1084
progress 85% @chr22:3000001, elapsed 0.7s, est remaining 0.1s, peak mem 420MB, user 6.5s, sys 75.9s, output queue size 1246
progress 90% @chrX:55000001, elapsed 0.7s, est remaining 0.1s, peak mem 420MB, user 6.9s, sys 80.6s, output queue size 1408
progress 95% @chr21:42000001, elapsed 0.7s, est remaining 0.0s, peak mem 420MB, user 7.4s, sys 85.4s, output queue size 1796
progress 100% @HLA-DRB1*12:01:01:1, elapsed 0.8s, est remaining 0.0s, peak mem 420MB, user 7.7s, sys 93.0s, output queue size 4993
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
signature: 000a06d1
features: bfebfbff 7ffefbff
extended: f3bfb7ef fb417ffe
amd bits: 2c100800 00000121
brand: Intel(R) Xeon(R) 6975P-C
threads: 192 max 192
algo: TNfilter
license: sentieon:TNhaplotyper=192
input file size: 57860
output file size: 46926
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 642 calls 0.001 user 0.000 sys 0.013 real
"predict_filter": 214 calls 0.000 user 0.007 sys 0.020 real
advance: 3219322 calls 0.884 user 40.785 sys 50.453 real
done: 1 calls 0.001 user 0.000 sys 0.002 real
execute: 1 calls 0.005 user 0.004 sys 0.911 real
fetch_ref: 624 calls 0.000 user 0.036 sys 0.310 real
idle: 20057 calls 0.667 user 0.704 sys 348.506 real
init: 1 calls 0.174 user 0.117 sys 0.773 real
overall: 440684544 mem 9.190 user 96.331 sys 2.776 real