.command.log - Workdir - NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_LOWDEPTH:BCFTOOLS_ANNOTATE (HCC1395_tumor_vs_HCC1395_BL;strelka)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/e4c3b909a9a9eac074cbe601f33c08/.command.log
Size: 999 bytes
Task: NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_LOWDEPTH:BCFTOOLS_ANNOTATE (HCC1395_tumor_vs_HCC1395_BL;strelka)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/e4c3b909a9a9eac074cbe601f33c08/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/CustomBEDs/low_depth_grch38.tsv.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/e4c3b909a9a9eac074cbe601f33c08/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/e4fa1a59a68c4f082391003d8c72f2/HCC1395_tumor_vs_HCC1395_BL.strelka.somatic_indels_BL.vcf.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/CustomBEDs/low_depth_header.txt
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/CustomBEDs/low_depth_grch38.tsv.gz
==> STAGING COMPLETE (6 inputs)

ls: *.vcf: No such file or directory
ls: *.bcf: No such file or directory
ls: *.bcf.gz: No such file or directory