cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta -t 12 --interval germline_rescue_targets.bed -i HCC1395_BL.recalibrated.bam --algo Haplotyper --given HCC1395_BL.dv_only_sites.vcf.gz --emit_mode variant HCC1395_BL.forcecall.unfiltered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr2:29531915, elapsed 0.0s, est remaining 0.1s, peak mem 51MB, user 0.0s, sys 0.0s, output queue size 9
progress 10% @chr2:214725647, elapsed 0.0s, est remaining 0.1s, peak mem 51MB, user 0.0s, sys 0.0s, output queue size 165
progress 15% @chr4:54229921, elapsed 0.0s, est remaining 0.1s, peak mem 51MB, user 0.0s, sys 0.0s, output queue size 384
progress 20% @chr5:112837544, elapsed 0.0s, est remaining 0.1s, peak mem 51MB, user 0.0s, sys 0.0s, output queue size 553
progress 25% @chr7:55155528, elapsed 0.0s, est remaining 0.1s, peak mem 51MB, user 0.0s, sys 0.0s, output queue size 697
progress 30% @chr7:116755355, elapsed 0.0s, est remaining 0.0s, peak mem 51MB, user 0.0s, sys 0.0s, output queue size 726
progress 35% @chr9:21974436, elapsed 0.0s, est remaining 0.1s, peak mem 51MB, user 0.0s, sys 0.0s, output queue size 851
progress 40% @chr10:43111197, elapsed 0.0s, est remaining 0.1s, peak mem 51MB, user 0.0s, sys 0.0s, output queue size 248
progress 45% @chr11:64803513, elapsed 0.0s, est remaining 0.0s, peak mem 51MB, user 0.0s, sys 0.0s, output queue size 365
progress 50% @chr12:11770919, elapsed 0.0s, est remaining 0.0s, peak mem 51MB, user 0.0s, sys 0.0s, output queue size 543
progress 55% @chr12:11796959, elapsed 0.0s, est remaining 0.0s, peak mem 52MB, user 0.0s, sys 0.0s, output queue size 555
progress 60% @chr12:11855326, elapsed 0.0s, est remaining 0.0s, peak mem 52MB, user 0.0s, sys 0.0s, output queue size 572
progress 65% @chr12:132661524, elapsed 0.0s, est remaining 0.0s, peak mem 52MB, user 0.0s, sys 0.0s, output queue size 634
progress 70% @chr14:65075125, elapsed 0.0s, est remaining 0.0s, peak mem 52MB, user 0.0s, sys 0.0s, output queue size 812
progress 75% @chr15:90727893, elapsed 0.0s, est remaining 0.0s, peak mem 52MB, user 0.0s, sys 0.0s, output queue size 975
progress 80% @chr17:7679679, elapsed 0.0s, est remaining 0.0s, peak mem 54MB, user 0.0s, sys 0.1s, output queue size 1202
progress 85% @chr17:39532155, elapsed 0.1s, est remaining 0.0s, peak mem 54MB, user 0.0s, sys 0.1s, output queue size 1384
progress 90% @chr17:61683205, elapsed 0.1s, est remaining 0.0s, peak mem 54MB, user 0.0s, sys 0.1s, output queue size 1485
progress 95% @chr19:50417158, elapsed 0.1s, est remaining 0.0s, peak mem 54MB, user 0.0s, sys 0.1s, output queue size 1669
progress 100% @chr21:34787802, elapsed 0.1s, est remaining 0.0s, peak mem 109MB, user 0.2s, sys 0.1s, output queue size 124
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 12 max 192
algo: Haplotyper
license: sentieon:Haplotyper=12
input file size: 163002590
output file size: 22292
reads: 1955548
contig: 2712 intervals 851273 bases
active: 5761 calls 0.000 user 0.000 sys 0.002 real
advance: 3049 calls 0.111 user 0.049 sys 0.207 real
calc: 5761 calls 0.015 user 0.000 sys 0.030 real
clip_region: 8 calls 0.003 user 0.000 sys 0.003 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.004 user 0.001 sys 0.143 real
fetch: 5761 calls 0.021 user 0.004 sys 0.014 real
fetch_ref: 5769 calls 0.002 user 0.001 sys 0.024 real
fetch_region: 8 calls 0.010 user 0.000 sys 0.002 real
idle: 25 calls 0.014 user 0.004 sys 12.761 real
init: 1 calls 0.000 user 0.000 sys 0.002 real
region: 5761 calls 0.013 user 0.000 sys 0.007 real
tracker: 5761 calls 0.001 user 0.000 sys 0.007 real
overall: 114978816 mem 0.309 user 0.350 sys 1.194 real
ls: cannot access '*.g.vcf.gz': No such file or directory
ls: cannot access '*.g.vcf.gz.tbi': No such file or directory