File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/57/0aeeed0b5ad3e7c4d73532985b6b6f/.command.log
Size
780 bytes
Task
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:VCF_ANNOTATE_INDEL_ENTROPY:INDEL_ENTROPY_ANNOTATION (HCC1395_BL)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/57/0aeeed0b5ad3e7c4d73532985b6b6f/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/57/0aeeed0b5ad3e7c4d73532985b6b6f/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4d/5155a0542ef62ea6fd32a9671e874d/HCC1395_BL.haplotyper.split.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/668392b7a8cf51864db71aa5e2d83e/HCC1395_BL.mpileup.gz
==> STAGING COMPLETE (4 inputs)

Parsing mpileup: HCC1395_BL.mpileup.gz
Found 20 positions with indel observations
Annotating VCF: HCC1395_BL.haplotyper.split.vcf.gz
[E::idx_find_and_load] Could not retrieve index file for 'HCC1395_BL.haplotyper.split.vcf.gz'
Output written to: HCC1395_BL.entropy.vcf