* installing *source* package 'HRDscoreAlteraBam' ...
** using staged installation
** libs
using C compiler: 'x86_64-conda-linux-gnu-cc (conda-forge gcc 15.2.0-18) 15.2.0'
using Fortran compiler: 'GNU Fortran (conda-forge gcc 15.2.0-18) 15.2.0'
installing to /tmp/nxf.fBtGEY7Ods/R_libs/00LOCK-hrd_score_altera_bam/00new/HRDscoreAlteraBam/libs
** R
** exec
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (HRDscoreAlteraBam)
Loading required package: pctGCdata
Attaching package: 'HRDscoreAlteraBam'
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Attaching package: 'dplyr'
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Loading required package: GenomicRanges
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Loading required package: BiocGenerics
Attaching package: 'BiocGenerics'
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as.data.frame, basename, cbind, colnames, dirname, do.call,
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lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
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Loading required package: cluster
NMF - BioConductor layer [OK] | Shared memory capabilities [NO: bigmemory] | Cores 191/192
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NMF
')
Attaching package: 'NMF'
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Attaching package: 'data.table'
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Attaching package: 'purrr'
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Attaching package: 'rtracklayer'
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Writing ./custom_Sig_18_tumor_normal.hrd_score_results.tsv
COMPLETE HRDscore