cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample HCC1395_tumor --normal_sample HCC1395_BL --max_event_count 5 -v HCC1395_tumor_vs_HCC1395_BL.tnseq.vcf.gz --contamination HCC1395_tumor_vs_HCC1395_BL.tnseq.contamination_data.tsv --tumor_segments HCC1395_tumor_vs_HCC1395_BL.tnseq.segments --orientation_priors HCC1395_tumor_vs_HCC1395_BL.tnseq.orientation_data.tsv HCC1395_tumor_vs_HCC1395_BL.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:127000001, elapsed 0.0s, est remaining 0.9s, peak mem 421MB, user 0.1s, sys 2.2s, output queue size 93
progress 10% @chr2:47000001, elapsed 0.1s, est remaining 0.8s, peak mem 421MB, user 0.4s, sys 6.7s, output queue size 251
progress 15% @chr3:34000001, elapsed 0.1s, est remaining 0.7s, peak mem 421MB, user 0.9s, sys 11.6s, output queue size 387
progress 20% @chr3:146000001, elapsed 0.2s, est remaining 0.6s, peak mem 421MB, user 1.4s, sys 17.0s, output queue size 549
progress 25% @chr4:125000001, elapsed 0.2s, est remaining 0.6s, peak mem 421MB, user 1.8s, sys 22.2s, output queue size 710
progress 30% @chr5:81000001, elapsed 0.2s, est remaining 0.5s, peak mem 421MB, user 2.2s, sys 26.0s, output queue size 71
progress 35% @chr5:156000001, elapsed 0.3s, est remaining 0.5s, peak mem 421MB, user 2.4s, sys 28.8s, output queue size 233
progress 40% @chr7:86000001, elapsed 0.3s, est remaining 0.5s, peak mem 421MB, user 3.0s, sys 33.6s, output queue size 394
progress 45% @chr8:116000001, elapsed 0.3s, est remaining 0.4s, peak mem 421MB, user 3.6s, sys 38.5s, output queue size 556
progress 50% @chr10:6000001, elapsed 0.4s, est remaining 0.4s, peak mem 421MB, user 4.1s, sys 43.3s, output queue size 717
progress 55% @chr10:44000001, elapsed 0.4s, est remaining 0.3s, peak mem 421MB, user 4.4s, sys 47.3s, output queue size 878
progress 60% @chr11:35000001, elapsed 0.4s, est remaining 0.3s, peak mem 421MB, user 4.9s, sys 48.8s, output queue size 1040
progress 65% @chr13:104000001, elapsed 0.5s, est remaining 0.3s, peak mem 421MB, user 5.4s, sys 52.9s, output queue size 1201
progress 70% @chr14:86000001, elapsed 0.5s, est remaining 0.2s, peak mem 421MB, user 5.8s, sys 58.1s, output queue size 1364
progress 75% @chr16:25000001, elapsed 0.5s, est remaining 0.2s, peak mem 421MB, user 6.3s, sys 63.4s, output queue size 1526
progress 80% @chr17:68000001, elapsed 0.6s, est remaining 0.1s, peak mem 421MB, user 6.9s, sys 68.6s, output queue size 1687
progress 85% @chr20:41000001, elapsed 0.6s, est remaining 0.1s, peak mem 421MB, user 7.5s, sys 73.3s, output queue size 1850
progress 90% @chrX:45000001, elapsed 0.6s, est remaining 0.1s, peak mem 421MB, user 7.9s, sys 77.5s, output queue size 2012
progress 95% @chrX:109000001, elapsed 0.7s, est remaining 0.0s, peak mem 421MB, user 8.3s, sys 82.0s, output queue size 2348
progress 100% @HLA-C*08:41:1, elapsed 0.8s, est remaining 0.0s, peak mem 421MB, user 8.6s, sys 94.6s, output queue size 5597
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 192 max 192
algo: TNfilter
license: sentieon:TNhaplotyper=192
input file size: 78466
output file size: 63293
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 861 calls 0.003 user 0.000 sys 0.019 real
"predict_filter": 287 calls 0.019 user 0.016 sys 0.083 real
advance: 3219322 calls 0.665 user 35.963 sys 43.924 real
done: 1 calls 0.002 user 0.000 sys 0.002 real
execute: 1 calls 0.000 user 0.009 sys 0.831 real
fetch_ref: 768 calls 0.007 user 0.051 sys 0.111 real
idle: 20057 calls 0.669 user 0.714 sys 414.337 real
init: 1 calls 0.241 user 0.030 sys 1.133 real
overall: 442257408 mem 10.218 user 98.129 sys 3.053 real