cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample Sig_18_tissue --normal_sample Sig_18_Blood --max_event_count 5 -v custom_Sig_18_tumor_normal.tnseq.vcf.gz --contamination custom_Sig_18_tumor_normal.tnseq.contamination_data.tsv --tumor_segments custom_Sig_18_tumor_normal.tnseq.segments --orientation_priors custom_Sig_18_tumor_normal.tnseq.orientation_data.tsv custom_Sig_18_tumor_normal.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:144000001, elapsed 0.1s, est remaining 1.1s, peak mem 418MB, user 0.1s, sys 3.1s, output queue size 82
progress 10% @chr1:218000001, elapsed 0.1s, est remaining 0.9s, peak mem 418MB, user 0.3s, sys 8.4s, output queue size 207
progress 15% @chr3:39000001, elapsed 0.1s, est remaining 0.8s, peak mem 418MB, user 0.6s, sys 15.8s, output queue size 369
progress 20% @chr4:11000001, elapsed 0.2s, est remaining 0.7s, peak mem 418MB, user 0.9s, sys 22.2s, output queue size 531
progress 25% @chr4:24000001, elapsed 0.2s, est remaining 0.7s, peak mem 418MB, user 1.2s, sys 28.7s, output queue size 261
progress 30% @chr5:150000001, elapsed 0.3s, est remaining 0.6s, peak mem 418MB, user 1.6s, sys 34.7s, output queue size 423
progress 35% @chr6:39000001, elapsed 0.3s, est remaining 0.6s, peak mem 418MB, user 1.8s, sys 40.8s, output queue size 583
progress 40% @chr7:18000001, elapsed 0.3s, est remaining 0.5s, peak mem 418MB, user 1.9s, sys 44.4s, output queue size 744
progress 45% @chr7:156000001, elapsed 0.4s, est remaining 0.5s, peak mem 418MB, user 2.2s, sys 49.9s, output queue size 906
progress 50% @chr10:14000001, elapsed 0.4s, est remaining 0.4s, peak mem 418MB, user 2.6s, sys 56.4s, output queue size 1068
progress 55% @chr10:93000001, elapsed 0.5s, est remaining 0.4s, peak mem 418MB, user 2.9s, sys 62.3s, output queue size 1229
progress 60% @chr12:13000001, elapsed 0.5s, est remaining 0.3s, peak mem 418MB, user 3.4s, sys 68.2s, output queue size 1392
progress 65% @chr14:13000001, elapsed 0.5s, est remaining 0.3s, peak mem 418MB, user 3.8s, sys 72.9s, output queue size 1553
progress 70% @chr15:29000001, elapsed 0.6s, est remaining 0.2s, peak mem 418MB, user 4.1s, sys 77.3s, output queue size 1715
progress 75% @chr16:40000001, elapsed 0.6s, est remaining 0.2s, peak mem 418MB, user 4.4s, sys 82.8s, output queue size 1877
progress 80% @chr17:30000001, elapsed 0.7s, est remaining 0.2s, peak mem 418MB, user 5.0s, sys 89.0s, output queue size 2039
progress 85% @chr20:26000001, elapsed 0.7s, est remaining 0.1s, peak mem 418MB, user 5.4s, sys 94.8s, output queue size 2201
progress 90% @chrX:64000001, elapsed 0.7s, est remaining 0.1s, peak mem 418MB, user 5.9s, sys 100.4s, output queue size 2363
progress 95% @chrX:150000001, elapsed 0.8s, est remaining 0.0s, peak mem 418MB, user 6.4s, sys 106.8s, output queue size 2714
progress 100% @HLA-DQA1*03:01:01:1, elapsed 0.9s, est remaining 0.0s, peak mem 418MB, user 6.6s, sys 119.7s, output queue size 5948
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 192 max 192
algo: TNfilter
license: sentieon:TNhaplotyper=192
input file size: 133851
output file size: 96623
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 1710 calls 0.006 user 0.001 sys 0.061 real
"predict_filter": 570 calls 0.020 user 0.041 sys 0.146 real
advance: 3219322 calls 0.601 user 47.087 sys 56.103 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.005 user 0.004 sys 0.919 real
fetch_ref: 1492 calls 0.013 user 0.089 sys 0.287 real
idle: 20057 calls 0.564 user 0.597 sys 314.339 real
init: 1 calls 0.273 user 0.123 sys 0.584 real
overall: 439111680 mem 8.213 user 125.025 sys 2.595 real