.command.log - Workdir - NFCORE_SAREK:SAREK:BAM_QC_SEX_ESTIMATION:BAM_ESTIMATE_SEX (HCC1395_tumor)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/b8f0b948d10fe637bf04c251bf75ad/.command.log
Size: 795 bytes
Task: NFCORE_SAREK:SAREK:BAM_QC_SEX_ESTIMATION:BAM_ESTIMATE_SEX (HCC1395_tumor)
Attempt

Content

  Downloading: s3://natera-platform-sandbox/pipeline-inputs/test_sarek/end_to_end_regression/output_runs/dev_latest_regression_eks__47a821d--20260221-174447/preprocessing/recalibrated/HCC1395_tumor/HCC1395_tumor.recal.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/b8f0b948d10fe637bf04c251bf75ad/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/b8f0b948d10fe637bf04c251bf75ad/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/test_sarek/end_to_end_regression/output_runs/dev_latest_regression_eks__47a821d--20260221-174447/preprocessing/recalibrated/HCC1395_tumor/HCC1395_tumor.recal.bam.bai
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: HCC1395_tumor.recal.bam.bai