Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/b5d99bef986ac78f20a0d86805df89/HCC1395_tumor.cnr
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/2a6ffde1994d958563c3cdb4d9f976/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/2a6ffde1994d958563c3cdb4d9f976/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/b5d99bef986ac78f20a0d86805df89/HCC1395_tumor.cns
==> STAGING COMPLETE (4 inputs)

Matplotlib created a temporary config/cache directory at /tmp/matplotlib-gn0w7hva because the default path (/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
Fontconfig error: No writable cache directories
No chrX found in sample; is the input truncated?
Treating sample HCC1395_tumor as male
No chrX found in sample; is the input truncated?
No chrX found in sample; is the input truncated?
No chrX found in sample; is the input truncated?
Found 0 gene-level gains and losses
Wrote HCC1395_tumor.genemetrics.tsv
Matplotlib created a temporary config/cache directory at /tmp/matplotlib-w9dbhn7b because the default path (/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
Fontconfig error: No writable cache directories