[INFO] Deconfliction mode: CHIP↔Germline, CHIP↔Somatic, Germline↔Somatic
[INFO] COSMIC heme: 113942 variants
[INFO] Building germline lookup...
[INFO] Germline lookup: 355 variants
[INFO] Building somatic lookup...
[INFO] Somatic lookup: 7 variants
[INFO] Processing CHIP VCF (Phase 1, pass 1: scoring decisions)...
[INFO] Processing CHIP VCF (Phase 1, pass 2: writing)...
[INFO] Writing deconflicted germline VCF...
[INFO] Germline: 0 variants suppressed
[INFO] Writing deconflicted somatic VCF...
[INFO] Somatic: 0 variants suppressed
[INFO] === Deconfliction Summary ===
CHIP variants processed:
CHIP_PASS no conflict: 0
CHIP ↔ Germline: 0
→ CHIP wins: 0
→ Germline wins: 0
→ Suppressed (grey): 0
CHIP ↔ Somatic (suspect):0
CHIP_FAIL pass-through: 291
Multihit cap: 0
Germline ↔ Somatic: 0
→ Germline wins: 0
→ Suppress both: 0
Audit TSV: HCC1395_BL.deconfliction_audit.tsv