cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample Sig_18_Blood --max_event_count 5 -v Sig_18_Blood.tnseq_tumor_only.vcf.gz --contamination Sig_18_Blood.tnseq_tumor_only.contamination_data.tsv --tumor_segments Sig_18_Blood.tnseq_tumor_only.segments --orientation_priors Sig_18_Blood.tnseq_tumor_only.orientation_data.tsv Sig_18_Blood.tnseq_tumor_only.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:145000001, elapsed 0.1s, est remaining 1.0s, peak mem 418MB, user 0.2s, sys 2.7s, output queue size 116
progress 10% @chr2:187000001, elapsed 0.1s, est remaining 0.8s, peak mem 418MB, user 0.4s, sys 6.4s, output queue size 278
progress 15% @chr3:36000001, elapsed 0.1s, est remaining 0.7s, peak mem 418MB, user 0.6s, sys 10.3s, output queue size 313
progress 20% @chr2:82000001, elapsed 0.2s, est remaining 0.6s, peak mem 418MB, user 0.7s, sys 14.2s, output queue size 475
progress 25% @chr4:188000001, elapsed 0.2s, est remaining 0.6s, peak mem 418MB, user 0.9s, sys 17.9s, output queue size 636
progress 30% @chr6:16000001, elapsed 0.2s, est remaining 0.5s, peak mem 418MB, user 1.0s, sys 21.5s, output queue size 798
progress 35% @chr6:163000001, elapsed 0.3s, est remaining 0.5s, peak mem 418MB, user 1.2s, sys 25.0s, output queue size 959
progress 40% @chr7:141000001, elapsed 0.3s, est remaining 0.4s, peak mem 418MB, user 1.3s, sys 28.8s, output queue size 1120
progress 45% @chr8:35000001, elapsed 0.3s, est remaining 0.4s, peak mem 418MB, user 1.5s, sys 32.7s, output queue size 1282
progress 50% @chr9:100000001, elapsed 0.4s, est remaining 0.4s, peak mem 418MB, user 1.7s, sys 36.2s, output queue size 1443
progress 55% @chr10:52000001, elapsed 0.4s, est remaining 0.3s, peak mem 418MB, user 1.8s, sys 39.9s, output queue size 1605
progress 60% @chr12:73000001, elapsed 0.4s, est remaining 0.3s, peak mem 418MB, user 1.9s, sys 43.6s, output queue size 1767
progress 65% @chr13:83000001, elapsed 0.5s, est remaining 0.3s, peak mem 418MB, user 2.0s, sys 47.2s, output queue size 1414
progress 70% @chr15:36000001, elapsed 0.5s, est remaining 0.2s, peak mem 418MB, user 2.2s, sys 51.0s, output queue size 1576
progress 75% @chr16:77000001, elapsed 0.5s, est remaining 0.2s, peak mem 418MB, user 2.4s, sys 54.6s, output queue size 1738
progress 80% @chr19:38000001, elapsed 0.6s, est remaining 0.1s, peak mem 418MB, user 2.6s, sys 58.3s, output queue size 1900
progress 85% @chr22:32000001, elapsed 0.6s, est remaining 0.1s, peak mem 418MB, user 2.7s, sys 61.9s, output queue size 2062
progress 90% @chrX:138000001, elapsed 0.6s, est remaining 0.1s, peak mem 418MB, user 2.9s, sys 65.4s, output queue size 2224
progress 95% @chrY:39000001, elapsed 0.7s, est remaining 0.0s, peak mem 418MB, user 3.1s, sys 69.1s, output queue size 2674
progress 100% @HLA-DRB1*14:05:01:1, elapsed 0.8s, est remaining 0.0s, peak mem 418MB, user 3.2s, sys 74.6s, output queue size 5809
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
signature: 000a06d1
features: 1f8bfbff fffab20b
extended: f1bf27eb 1b407f7e
amd bits: 2c100800 00000121
brand: Intel(R) Xeon(R) 6975P-C
threads: 192 max 192
algo: TNfilter
license: sentieon:TNhaplotyper=192
input file size: 66383
output file size: 50067
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 816 calls 0.000 user 0.000 sys 0.019 real
"predict_filter": 272 calls 0.013 user 0.004 sys 0.155 real
advance: 3219322 calls 0.518 user 33.806 sys 39.412 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.001 user 0.001 sys 0.987 real
fetch_ref: 816 calls 0.006 user 0.056 sys 0.404 real
idle: 20057 calls 0.517 user 0.088 sys 292.681 real
init: 1 calls 0.223 user 0.120 sys 0.477 real
overall: 439115776 mem 4.489 user 77.650 sys 2.471 real