|
succeeded
|
NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:SAMTOOLS_STATS (Sig_18_tissue)
|
34s |
4s |
11s |
19s |
9.2 MB |
139% |
533.0 MB |
133.6 KB |
0 bytes |
136.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:GENERATE_CHIP_REPORT (HCC1395_BL)
|
3s |
2s |
0s |
0s |
13.6 MB |
1055% |
11.1 MB |
21.6 KB |
0 bytes |
32.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:GENERATE_CHIP_REPORT (Sig_18_Blood)
|
3s |
2s |
0s |
0s |
13.4 MB |
979% |
11.1 MB |
21.6 KB |
0 bytes |
32.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:MULTIQC
|
41s |
20s |
14s |
6s |
1.0 GB |
211% |
82.4 MB |
23.1 MB |
0 bytes |
22.8 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VARIANT_QC_TO_CSV (variant_qc_csv)
|
13s |
12s |
0s |
0s |
18.0 MB |
94% |
1.7 MB |
1.8 KB |
0 bytes |
8.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (custom_Sig_18_tumor_normal;manta)
|
4s |
2s |
- |
- |
3.3 MB |
5042% |
177.0 KB |
20.0 KB |
0 bytes |
32.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (custom_Sig_18_tumor_normal;manta)
|
4s |
2s |
- |
- |
14.1 MB |
6264% |
175.9 KB |
19.4 KB |
0 bytes |
32.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (custom_Sig_18_tumor_normal;strelka)
|
4s |
2s |
- |
- |
3.2 MB |
7348% |
188.3 KB |
25.5 KB |
0 bytes |
36.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (custom_Sig_18_tumor_normal;strelka)
|
5s |
3s |
- |
- |
3.2 MB |
7121% |
205.7 KB |
35.8 KB |
0 bytes |
44.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (HCC1395_BL;germline_cnv)
|
4s |
2s |
- |
- |
3.2 MB |
7095% |
138.3 KB |
3.4 KB |
0 bytes |
16.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (HCC1395_BL;sentieon_haplotyper_rf)
|
4s |
2s |
- |
- |
3.3 MB |
1128% |
212.6 KB |
43.7 KB |
0 bytes |
52.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (HCC1395_tumor_vs_HCC1395_BL;manta)
|
5s |
3s |
- |
- |
3.2 MB |
7433% |
176.1 KB |
19.7 KB |
0 bytes |
32.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (HCC1395_tumor_vs_HCC1395_BL;manta)
|
5s |
3s |
- |
- |
17.7 MB |
7729% |
175.4 KB |
19.4 KB |
0 bytes |
32.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (HCC1395_tumor_vs_HCC1395_BL;strelka)
|
7s |
5s |
1s |
1s |
3.3 MB |
3252% |
210.5 KB |
39.4 KB |
0 bytes |
48.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (HCC1395_tumor_vs_HCC1395_BL;strelka)
|
8s |
6s |
1s |
1s |
16.7 MB |
2091% |
182.5 KB |
23.0 KB |
0 bytes |
36.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (Sig_18_Blood;germline_cnv)
|
4s |
2s |
- |
- |
3.1 MB |
6503% |
138.3 KB |
3.4 KB |
0 bytes |
16.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (Sig_18_Blood;sentieon_haplotyper_rf)
|
4s |
3s |
- |
- |
15.4 MB |
6609% |
227.7 KB |
46.3 KB |
0 bytes |
56.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_LOWDEPTH:BCFTOOLS_ANNOTATE (custom_Sig_18_tumor_normal;manta)
|
13s |
11s |
- |
- |
16.4 MB |
6923% |
222.5 KB |
20.2 KB |
0 bytes |
32.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_LOWDEPTH:BCFTOOLS_ANNOTATE (custom_Sig_18_tumor_normal;manta)
|
3s |
1s |
- |
- |
3.2 MB |
2026% |
212.1 KB |
19.6 KB |
0 bytes |
32.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_LOWDEPTH:BCFTOOLS_ANNOTATE (custom_Sig_18_tumor_normal;strelka)
|
4s |
2s |
- |
- |
3.3 MB |
8273% |
231.1 KB |
25.8 KB |
0 bytes |
36.0 KB |
1 |