.command.err - Workdir - NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:VCF_SOMATIC_SNV_INDEL:HARD_FILTER_VCF (custom_Sig_18_tumor_normal)

File Info

Filename: .command.err
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/e900d02ca2de9ae15ac5c4ede04c11/.command.err
Size: 365 bytes
Task: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:VCF_SOMATIC_SNV_INDEL:HARD_FILTER_VCF (custom_Sig_18_tumor_normal)
Attempt

Content

Loading PON positions from pon_tnseq_42_curated_v4.vcf.gz
  Loaded 550,680 PON positions
Loading POT positions from aih_tumor_1577_pot_1pct_artifacts_only.vcf.gz
  Loaded 545 POT positions
Hard filter summary: 420 variants processed, 8 PASS
  low_tumor_dp: 3
  low_normal_dp: 7
  low_tumor_alt: 24
  high_normal_vaf: 351
  panel_of_normals: 48
  panel_of_tumors: 0