cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample HCC1395_BL --max_event_count 5 -v HCC1395_BL.tnseq_tumor_only.vcf.gz --contamination HCC1395_BL.tnseq_tumor_only.contamination_data.tsv --tumor_segments HCC1395_BL.tnseq_tumor_only.segments --orientation_priors HCC1395_BL.tnseq_tumor_only.orientation_data.tsv HCC1395_BL.tnseq_tumor_only.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:13000001, elapsed 0.1s, est remaining 1.4s, peak mem 415MB, user 0.2s, sys 3.0s, output queue size 157
progress 10% @chr2:130000001, elapsed 0.1s, est remaining 1.0s, peak mem 415MB, user 0.3s, sys 6.5s, output queue size 318
progress 15% @chr2:108000001, elapsed 0.2s, est remaining 0.9s, peak mem 415MB, user 0.4s, sys 10.1s, output queue size 449
progress 20% @chr3:75000001, elapsed 0.2s, est remaining 0.9s, peak mem 415MB, user 0.5s, sys 13.9s, output queue size 560
progress 25% @chr5:12000001, elapsed 0.3s, est remaining 0.8s, peak mem 415MB, user 0.6s, sys 17.8s, output queue size 721
progress 30% @chr6:10000001, elapsed 0.3s, est remaining 0.7s, peak mem 415MB, user 0.7s, sys 21.5s, output queue size 882
progress 35% @chr6:125000001, elapsed 0.4s, est remaining 0.7s, peak mem 415MB, user 0.8s, sys 25.4s, output queue size 551
progress 40% @chr7:116000001, elapsed 0.4s, est remaining 0.6s, peak mem 415MB, user 0.9s, sys 29.3s, output queue size 713
progress 45% @chr8:6000001, elapsed 0.5s, est remaining 0.6s, peak mem 415MB, user 0.9s, sys 32.9s, output queue size 874
progress 50% @chr10:59000001, elapsed 0.5s, est remaining 0.5s, peak mem 415MB, user 1.0s, sys 36.9s, output queue size 1036
progress 55% @chr9:49000001, elapsed 0.6s, est remaining 0.5s, peak mem 415MB, user 1.0s, sys 40.6s, output queue size 1198
progress 60% @chr12:74000001, elapsed 0.6s, est remaining 0.4s, peak mem 415MB, user 1.1s, sys 44.0s, output queue size 1360
progress 65% @chr13:85000001, elapsed 0.7s, est remaining 0.4s, peak mem 415MB, user 1.2s, sys 47.4s, output queue size 1521
progress 70% @chr13:79000001, elapsed 0.7s, est remaining 0.3s, peak mem 415MB, user 1.3s, sys 50.6s, output queue size 1682
progress 75% @chr17:14000001, elapsed 0.7s, est remaining 0.2s, peak mem 415MB, user 1.3s, sys 54.0s, output queue size 1844
progress 80% @chr20:18000001, elapsed 0.8s, est remaining 0.2s, peak mem 415MB, user 1.4s, sys 56.2s, output queue size 292
progress 85% @chr22:40000001, elapsed 0.9s, est remaining 0.2s, peak mem 415MB, user 1.5s, sys 59.0s, output queue size 454
progress 90% @chrX:111000001, elapsed 0.9s, est remaining 0.1s, peak mem 415MB, user 1.5s, sys 62.7s, output queue size 616
progress 95% @chr17_GL000258v2_alt:1, elapsed 1.0s, est remaining 0.1s, peak mem 415MB, user 1.6s, sys 65.6s, output queue size 1083
progress 100% @HLA-DRB1*15:01:01:04:1, elapsed 1.1s, est remaining 0.0s, peak mem 415MB, user 1.8s, sys 69.4s, output queue size 4202
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 192 max 192
algo: TNfilter
license: sentieon:TNhaplotyper=192
input file size: 58752
output file size: 46435
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 684 calls 0.002 user 0.000 sys 0.019 real
"predict_filter": 228 calls 0.006 user 0.006 sys 0.013 real
advance: 3219322 calls 0.445 user 31.762 sys 55.253 real
done: 1 calls 0.000 user 0.000 sys 0.003 real
execute: 1 calls 0.005 user 0.003 sys 1.247 real
fetch_ref: 672 calls 0.001 user 0.005 sys 0.011 real
idle: 20057 calls 0.453 user 0.170 sys 306.414 real
init: 1 calls 0.325 user 0.094 sys 0.528 real
overall: 435957760 mem 2.853 user 72.992 sys 2.799 real