cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample Sig_18_tissue --normal_sample Sig_18_Blood --max_event_count 5 -v custom_Sig_18_tumor_normal.tnseq.vcf.gz --contamination custom_Sig_18_tumor_normal.tnseq.contamination_data.tsv --tumor_segments custom_Sig_18_tumor_normal.tnseq.segments --orientation_priors custom_Sig_18_tumor_normal.tnseq.orientation_data.tsv custom_Sig_18_tumor_normal.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr2:35000001, elapsed 0.1s, est remaining 1.0s, peak mem 417MB, user 0.2s, sys 2.2s, output queue size 102
progress 10% @chr2:182000001, elapsed 0.1s, est remaining 0.8s, peak mem 417MB, user 0.3s, sys 6.7s, output queue size 255
progress 15% @chr3:37000001, elapsed 0.1s, est remaining 0.7s, peak mem 417MB, user 0.5s, sys 10.5s, output queue size 417
progress 20% @chr4:59000001, elapsed 0.1s, est remaining 0.6s, peak mem 417MB, user 0.7s, sys 14.6s, output queue size 579
progress 25% @chr4:156000001, elapsed 0.2s, est remaining 0.5s, peak mem 417MB, user 0.9s, sys 18.5s, output queue size 740
progress 30% @chr5:148000001, elapsed 0.2s, est remaining 0.5s, peak mem 417MB, user 1.1s, sys 22.6s, output queue size 902
progress 35% @chr6:142000001, elapsed 0.2s, est remaining 0.5s, peak mem 417MB, user 1.3s, sys 26.4s, output queue size 1062
progress 40% @chr7:123000001, elapsed 0.3s, est remaining 0.4s, peak mem 417MB, user 1.5s, sys 30.3s, output queue size 1224
progress 45% @chr9:8000001, elapsed 0.3s, est remaining 0.4s, peak mem 417MB, user 1.8s, sys 34.4s, output queue size 1386
progress 50% @chr9:17000001, elapsed 0.4s, est remaining 0.4s, peak mem 417MB, user 2.0s, sys 38.4s, output queue size 1533
progress 55% @chr9:29000001, elapsed 0.4s, est remaining 0.3s, peak mem 417MB, user 2.3s, sys 42.4s, output queue size 1694
progress 60% @chr10:128000001, elapsed 0.4s, est remaining 0.3s, peak mem 417MB, user 2.4s, sys 46.2s, output queue size 1857
progress 65% @chr13:88000001, elapsed 0.5s, est remaining 0.2s, peak mem 417MB, user 2.6s, sys 50.0s, output queue size 2009
progress 70% @chr14:106000001, elapsed 0.5s, est remaining 0.2s, peak mem 417MB, user 2.8s, sys 53.8s, output queue size 2171
progress 75% @chr13:35000001, elapsed 0.5s, est remaining 0.2s, peak mem 417MB, user 2.9s, sys 57.5s, output queue size 2333
progress 80% @chr18:12000001, elapsed 0.6s, est remaining 0.1s, peak mem 417MB, user 3.1s, sys 61.1s, output queue size 2448
progress 85% @chr22:46000001, elapsed 0.6s, est remaining 0.1s, peak mem 417MB, user 3.3s, sys 64.6s, output queue size 2611
progress 90% @chrX:78000001, elapsed 0.6s, est remaining 0.1s, peak mem 417MB, user 3.3s, sys 68.2s, output queue size 2773
progress 95% @chr19_KI270932v1_alt:1, elapsed 0.7s, est remaining 0.0s, peak mem 417MB, user 3.4s, sys 72.2s, output queue size 3259
progress 100% @HLA-DQB1*03:01:01:01:1, elapsed 0.8s, est remaining 0.0s, peak mem 417MB, user 3.6s, sys 79.7s, output queue size 252
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 192 max 192
algo: TNfilter
license: sentieon:TNhaplotyper=192
input file size: 133851
output file size: 96623
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 1710 calls 0.003 user 0.000 sys 0.082 real
"predict_filter": 570 calls 0.005 user 0.016 sys 0.114 real
advance: 3219322 calls 0.579 user 34.774 sys 42.363 real
done: 1 calls 0.000 user 0.000 sys 0.003 real
execute: 1 calls 0.006 user 0.005 sys 0.953 real
fetch_ref: 1492 calls 0.000 user 0.026 sys 0.238 real
idle: 20057 calls 0.537 user 0.289 sys 304.589 real
init: 1 calls 0.314 user 0.100 sys 0.541 real
overall: 437514240 mem 5.051 user 83.414 sys 2.514 real