[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXdtHMfz/xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_chr21.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXdtHMfz/xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_chr21.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXdtHMfz/xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_chr21.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXdtHMfz/xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_chr21.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXdtHMfz/xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_chr21.bed.gz.tbi
[2026-06-04T19:27:34.282734Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T19:27:34.302400Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [WorkflowRunner] pyFlowClientWorkflowClass: MantaWorkflow
[2026-06-04T19:27:34.302435Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T19:27:34.302440Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T19:27:34.302445Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXdtHMfz'
[2026-06-04T19:27:34.302449Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/manta/runWorkflow.py -m local -j 14'
[2026-06-04T19:27:34.302456Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T19:27:34.302459Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [WorkflowRunner] [RunParameters] nCores: 14
[2026-06-04T19:27:34.302463Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-04T19:27:34.302467Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/manta/workspace/pyflow.data
[2026-06-04T19:27:34.302471Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T19:27:34.302475Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T19:27:34.302478Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T19:27:34.302482Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T19:27:34.303390Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T19:27:34.303509Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [MantaWorkflow] Initiating Manta workflow version: 1.6.0
[2026-06-04T19:27:34.303738Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [WorkflowRunner] Adding command task 'getAlignmentStats_makeTmpDir' to master workflow
[2026-06-04T19:27:34.304181Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Launching command task: 'getAlignmentStats_makeTmpDir' from master workflow
[2026-06-04T19:27:34.304459Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [WorkflowRunner] Adding command task 'getAlignmentStats_generateStats_000' to master workflow
[2026-06-04T19:27:34.304794Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [WorkflowRunner] Adding command task 'getAlignmentStats_generateStats_001' to master workflow
[2026-06-04T19:27:34.305319Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [WorkflowRunner] Adding command task 'getAlignmentStats_mergeStats' to master workflow
[2026-06-04T19:27:34.305708Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [WorkflowRunner] Adding command task 'getAlignmentStats_removeTmpDir' to master workflow
[2026-06-04T19:27:34.305904Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [WorkflowRunner] Adding command task 'summarizeStats' to master workflow
[2026-06-04T19:27:34.307430Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskRunner:getAlignmentStats_makeTmpDir] Task initiated on local node
[2026-06-04T19:27:34.307606Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [WorkflowRunner] Adding command task 'makeGraphTmpDir' to master workflow
[2026-06-04T19:27:34.339850Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Completed command task: 'getAlignmentStats_makeTmpDir' launched from master workflow
[2026-06-04T19:27:34.340364Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Launching command task: 'getAlignmentStats_generateStats_001' from master workflow
[2026-06-04T19:27:34.340805Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Launching command task: 'getAlignmentStats_generateStats_000' from master workflow
[2026-06-04T19:27:34.343656Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskRunner:getAlignmentStats_generateStats_001] Task initiated on local node
[2026-06-04T19:27:34.344125Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskRunner:getAlignmentStats_generateStats_000] Task initiated on local node
[2026-06-04T19:27:34.578319Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [WorkflowRunner] Adding command task 'makeLocusGraph_chromId_020_chr21-5117103-5117231_0000_to_chromId_020_chr21-39269899-39270033_0000' to master workflow
[2026-06-04T19:27:34.827621Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [WorkflowRunner] Adding command task 'makeLocusGraph_chromId_020_chr21-39270283-39270433_0000_to_chromId_020_chr21-46664295-46664374_0000' to master workflow
[2026-06-04T19:27:34.827862Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [WorkflowRunner] Adding sub-workflow task 'mergeLocusGraphInputList' to master workflow
[2026-06-04T19:27:34.827951Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [WorkflowRunner] Adding command task 'mergeLocusGraph' to master workflow
[2026-06-04T19:27:34.828025Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [WorkflowRunner] Adding command task 'checkLocusGraph' to master workflow
[2026-06-04T19:27:34.828093Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [WorkflowRunner] Adding command task 'removeTmpDir' to master workflow
[2026-06-04T19:27:34.828158Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [WorkflowRunner] Adding command task 'locusGraphStats' to master workflow
[2026-06-04T19:27:34.828378Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [WorkflowRunner] Adding command task 'makeHyGenDir' to master workflow
[2026-06-04T19:27:34.828497Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [WorkflowRunner] Adding command task 'generateCandidateSV_0000' to master workflow
[2026-06-04T19:27:34.828584Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [WorkflowRunner] Adding command task 'fixVcfHeader_sortCandidateSV' to master workflow
[2026-06-04T19:27:34.828693Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [WorkflowRunner] Adding sub-workflow task 'sortCandidateSVInputList' to master workflow
[2026-06-04T19:27:34.828759Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [WorkflowRunner] Adding command task 'sort_sortCandidateSV' to master workflow
[2026-06-04T19:27:34.828824Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [WorkflowRunner] Adding command task 'tabix_sortCandidateSV' to master workflow
[2026-06-04T19:27:34.828888Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [WorkflowRunner] Adding command task 'fixVcfHeader_sortDiploidSV' to master workflow
[2026-06-04T19:27:34.828984Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [WorkflowRunner] Adding sub-workflow task 'sortDiploidSVInputList' to master workflow
[2026-06-04T19:27:34.829054Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [WorkflowRunner] Adding command task 'sort_sortDiploidSV' to master workflow
[2026-06-04T19:27:34.829117Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [WorkflowRunner] Adding command task 'tabix_sortDiploidSV' to master workflow
[2026-06-04T19:27:34.829180Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [WorkflowRunner] Adding command task 'fixVcfHeader_sortSomaticSV' to master workflow
[2026-06-04T19:27:34.829274Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [WorkflowRunner] Adding sub-workflow task 'sortSomaticSVInputList' to master workflow
[2026-06-04T19:27:34.829338Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [WorkflowRunner] Adding command task 'sort_sortSomaticSV' to master workflow
[2026-06-04T19:27:34.829408Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [WorkflowRunner] Adding command task 'tabix_sortSomaticSV' to master workflow
[2026-06-04T19:27:34.829481Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [WorkflowRunner] Adding command task 'extractSmallIndels' to master workflow
[2026-06-04T19:27:34.829542Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [WorkflowRunner] Adding command task 'extractSmallIndels_tabix' to master workflow
[2026-06-04T19:27:34.829637Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [WorkflowRunner] Adding sub-workflow task 'sortEdgeRuntimeLogsInputList' to master workflow
[2026-06-04T19:27:34.829705Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [WorkflowRunner] Adding command task 'sortEdgeRuntimeLogs' to master workflow
[2026-06-04T19:27:34.829744Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T19:27:36.287538Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Completed command task: 'getAlignmentStats_generateStats_000' launched from master workflow
[2026-06-04T19:27:39.658698Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Completed command task: 'getAlignmentStats_generateStats_001' launched from master workflow
[2026-06-04T19:27:39.659128Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Launching command task: 'getAlignmentStats_mergeStats' from master workflow
[2026-06-04T19:27:39.661897Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskRunner:getAlignmentStats_mergeStats] Task initiated on local node
[2026-06-04T19:27:39.690890Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Completed command task: 'getAlignmentStats_mergeStats' launched from master workflow
[2026-06-04T19:27:39.691284Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Launching command task: 'getAlignmentStats_removeTmpDir' from master workflow
[2026-06-04T19:27:39.691664Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Launching command task: 'makeGraphTmpDir' from master workflow
[2026-06-04T19:27:39.691952Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Launching command task: 'summarizeStats' from master workflow
[2026-06-04T19:27:39.694570Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskRunner:makeGraphTmpDir] Task initiated on local node
[2026-06-04T19:27:39.695996Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskRunner:getAlignmentStats_removeTmpDir] Task initiated on local node
[2026-06-04T19:27:39.696945Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskRunner:summarizeStats] Task initiated on local node
[2026-06-04T19:27:39.726244Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Completed command task: 'getAlignmentStats_removeTmpDir' launched from master workflow
[2026-06-04T19:27:39.726291Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Completed command task: 'makeGraphTmpDir' launched from master workflow
[2026-06-04T19:27:39.726310Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Completed command task: 'summarizeStats' launched from master workflow
[2026-06-04T19:27:39.726648Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Launching command task: 'makeLocusGraph_chromId_020_chr21-39270283-39270433_0000_to_chromId_020_chr21-46664295-46664374_0000' from master workflow
[2026-06-04T19:27:39.726932Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Launching command task: 'makeLocusGraph_chromId_020_chr21-5117103-5117231_0000_to_chromId_020_chr21-39269899-39270033_0000' from master workflow
[2026-06-04T19:27:39.744905Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskRunner:makeLocusGraph_chromId_020_chr21-39270283-39270433_0000_to_chromId_020_chr21-46664295-46664374_0000] Task initiated on local node
[2026-06-04T19:27:39.746103Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskRunner:makeLocusGraph_chromId_020_chr21-5117103-5117231_0000_to_chromId_020_chr21-39269899-39270033_0000] Task initiated on local node
[2026-06-04T19:27:49.942357Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Completed command task: 'makeLocusGraph_chromId_020_chr21-5117103-5117231_0000_to_chromId_020_chr21-39269899-39270033_0000' launched from master workflow
[2026-06-04T19:27:57.111814Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Completed command task: 'makeLocusGraph_chromId_020_chr21-39270283-39270433_0000_to_chromId_020_chr21-46664295-46664374_0000' launched from master workflow
[2026-06-04T19:27:57.112418Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Launching sub-workflow task: 'mergeLocusGraphInputList' from master workflow
[2026-06-04T19:27:57.112605Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskRunner:mergeLocusGraphInputList] Starting task specification for sub-workflow
[2026-06-04T19:27:57.112799Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskRunner:mergeLocusGraphInputList] Finished task specification for sub-workflow
[2026-06-04T19:27:57.113845Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Completed sub-workflow task: 'mergeLocusGraphInputList' launched from master workflow
[2026-06-04T19:27:57.114101Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Launching command task: 'mergeLocusGraph' from master workflow
[2026-06-04T19:27:57.116529Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskRunner:mergeLocusGraph] Task initiated on local node
[2026-06-04T19:27:57.177898Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Completed command task: 'mergeLocusGraph' launched from master workflow
[2026-06-04T19:27:57.178245Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Launching command task: 'checkLocusGraph' from master workflow
[2026-06-04T19:27:57.178501Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Launching command task: 'locusGraphStats' from master workflow
[2026-06-04T19:27:57.179164Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Launching command task: 'removeTmpDir' from master workflow
[2026-06-04T19:27:57.182511Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskRunner:checkLocusGraph] Task initiated on local node
[2026-06-04T19:27:57.183741Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskRunner:removeTmpDir] Task initiated on local node
[2026-06-04T19:27:57.184589Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskRunner:locusGraphStats] Task initiated on local node
[2026-06-04T19:27:57.212649Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Completed command task: 'removeTmpDir' launched from master workflow
[2026-06-04T19:27:57.216160Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Completed command task: 'checkLocusGraph' launched from master workflow
[2026-06-04T19:27:57.216202Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Completed command task: 'locusGraphStats' launched from master workflow
[2026-06-04T19:27:57.216459Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Launching command task: 'makeHyGenDir' from master workflow
[2026-06-04T19:27:57.218797Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskRunner:makeHyGenDir] Task initiated on local node
[2026-06-04T19:27:57.248373Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Completed command task: 'makeHyGenDir' launched from master workflow
[2026-06-04T19:27:57.248745Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Launching command task: 'generateCandidateSV_0000' from master workflow
[2026-06-04T19:27:57.251076Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskRunner:generateCandidateSV_0000] Task initiated on local node
[2026-06-04T19:27:59.618200Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Completed command task: 'generateCandidateSV_0000' launched from master workflow
[2026-06-04T19:27:59.618552Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Launching sub-workflow task: 'sortEdgeRuntimeLogsInputList' from master workflow
[2026-06-04T19:27:59.618808Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskRunner:sortEdgeRuntimeLogsInputList] Starting task specification for sub-workflow
[2026-06-04T19:27:59.619066Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Launching command task: 'fixVcfHeader_sortSomaticSV' from master workflow
[2026-06-04T19:27:59.619173Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskRunner:sortEdgeRuntimeLogsInputList] Finished task specification for sub-workflow
[2026-06-04T19:27:59.619520Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Launching command task: 'fixVcfHeader_sortCandidateSV' from master workflow
[2026-06-04T19:27:59.620003Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Launching command task: 'fixVcfHeader_sortDiploidSV' from master workflow
[2026-06-04T19:27:59.620833Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Completed sub-workflow task: 'sortEdgeRuntimeLogsInputList' launched from master workflow
[2026-06-04T19:27:59.623871Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskRunner:fixVcfHeader_sortSomaticSV] Task initiated on local node
[2026-06-04T19:27:59.624334Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskRunner:fixVcfHeader_sortCandidateSV] Task initiated on local node
[2026-06-04T19:27:59.624656Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Launching command task: 'sortEdgeRuntimeLogs' from master workflow
[2026-06-04T19:27:59.627668Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskRunner:fixVcfHeader_sortDiploidSV] Task initiated on local node
[2026-06-04T19:27:59.628575Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskRunner:sortEdgeRuntimeLogs] Task initiated on local node
[2026-06-04T19:27:59.690087Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Completed command task: 'fixVcfHeader_sortSomaticSV' launched from master workflow
[2026-06-04T19:27:59.690165Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Completed command task: 'fixVcfHeader_sortDiploidSV' launched from master workflow
[2026-06-04T19:27:59.690186Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Completed command task: 'sortEdgeRuntimeLogs' launched from master workflow
[2026-06-04T19:27:59.690204Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Completed command task: 'fixVcfHeader_sortCandidateSV' launched from master workflow
[2026-06-04T19:27:59.690412Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Launching sub-workflow task: 'sortSomaticSVInputList' from master workflow
[2026-06-04T19:27:59.690700Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskRunner:sortSomaticSVInputList] Starting task specification for sub-workflow
[2026-06-04T19:27:59.690908Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Launching sub-workflow task: 'sortDiploidSVInputList' from master workflow
[2026-06-04T19:27:59.691311Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskRunner:sortDiploidSVInputList] Starting task specification for sub-workflow
[2026-06-04T19:27:59.691474Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Launching sub-workflow task: 'sortCandidateSVInputList' from master workflow
[2026-06-04T19:27:59.691640Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskRunner:sortCandidateSVInputList] Starting task specification for sub-workflow
[2026-06-04T19:27:59.691872Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskRunner:sortSomaticSVInputList] Finished task specification for sub-workflow
[2026-06-04T19:27:59.692030Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskRunner:sortDiploidSVInputList] Finished task specification for sub-workflow
[2026-06-04T19:27:59.692400Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskRunner:sortCandidateSVInputList] Finished task specification for sub-workflow
[2026-06-04T19:27:59.692879Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Completed sub-workflow task: 'sortSomaticSVInputList' launched from master workflow
[2026-06-04T19:27:59.692904Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Completed sub-workflow task: 'sortDiploidSVInputList' launched from master workflow
[2026-06-04T19:27:59.692920Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Completed sub-workflow task: 'sortCandidateSVInputList' launched from master workflow
[2026-06-04T19:27:59.693100Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Launching command task: 'sort_sortSomaticSV' from master workflow
[2026-06-04T19:27:59.693304Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Launching command task: 'sort_sortDiploidSV' from master workflow
[2026-06-04T19:27:59.694747Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Launching command task: 'sort_sortCandidateSV' from master workflow
[2026-06-04T19:27:59.695475Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskRunner:sort_sortSomaticSV] Task initiated on local node
[2026-06-04T19:27:59.697918Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskRunner:sort_sortDiploidSV] Task initiated on local node
[2026-06-04T19:27:59.699032Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskRunner:sort_sortCandidateSV] Task initiated on local node
[2026-06-04T19:27:59.759144Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Completed command task: 'sort_sortSomaticSV' launched from master workflow
[2026-06-04T19:27:59.759213Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Completed command task: 'sort_sortDiploidSV' launched from master workflow
[2026-06-04T19:27:59.759234Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Completed command task: 'sort_sortCandidateSV' launched from master workflow
[2026-06-04T19:27:59.759452Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Launching command task: 'tabix_sortCandidateSV' from master workflow
[2026-06-04T19:27:59.759864Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Launching command task: 'tabix_sortDiploidSV' from master workflow
[2026-06-04T19:27:59.760119Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Launching command task: 'extractSmallIndels' from master workflow
[2026-06-04T19:27:59.762450Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Launching command task: 'tabix_sortSomaticSV' from master workflow
[2026-06-04T19:27:59.762675Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskRunner:tabix_sortDiploidSV] Task initiated on local node
[2026-06-04T19:27:59.765654Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskRunner:tabix_sortCandidateSV] Task initiated on local node
[2026-06-04T19:27:59.765931Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskRunner:extractSmallIndels] Task initiated on local node
[2026-06-04T19:27:59.766530Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskRunner:tabix_sortSomaticSV] Task initiated on local node
[2026-06-04T19:27:59.794959Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Completed command task: 'tabix_sortCandidateSV' launched from master workflow
[2026-06-04T19:27:59.795037Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Completed command task: 'tabix_sortSomaticSV' launched from master workflow
[2026-06-04T19:27:59.795060Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Completed command task: 'tabix_sortDiploidSV' launched from master workflow
[2026-06-04T19:27:59.802492Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Completed command task: 'extractSmallIndels' launched from master workflow
[2026-06-04T19:27:59.802674Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Launching command task: 'extractSmallIndels_tabix' from master workflow
[2026-06-04T19:27:59.804824Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskRunner:extractSmallIndels_tabix] Task initiated on local node
[2026-06-04T19:27:59.834557Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [TaskManager] Completed command task: 'extractSmallIndels_tabix' launched from master workflow
[2026-06-04T19:28:07.922559Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [WorkflowRunner] Manta workflow successfully completed.
[2026-06-04T19:28:07.922559Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [WorkflowRunner] 
[2026-06-04T19:28:07.922559Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [WorkflowRunner] 	workflow version: 1.6.0
[2026-06-04T19:28:07.922626Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [WorkflowRunner] 
[2026-06-04T19:28:07.922632Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T19:28:07.922639Z] [nf-4a8e5cff8f79c3bfcc36cb7f2b25ce6c-b4a5b-bzdh4] [626_1] [WorkflowRunner] Elapsed time for full workflow: 33 sec