cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample HCC1395_tumor --normal_sample HCC1395_BL --max_event_count 5 -v HCC1395_tumor_vs_HCC1395_BL.tnseq.vcf.gz --contamination HCC1395_tumor_vs_HCC1395_BL.tnseq.contamination_data.tsv --tumor_segments HCC1395_tumor_vs_HCC1395_BL.tnseq.segments --orientation_priors HCC1395_tumor_vs_HCC1395_BL.tnseq.orientation_data.tsv HCC1395_tumor_vs_HCC1395_BL.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:184000001, elapsed 0.1s, est remaining 1.1s, peak mem 423MB, user 0.1s, sys 2.3s, output queue size 152
progress 10% @chr2:86000001, elapsed 0.1s, est remaining 0.9s, peak mem 423MB, user 0.2s, sys 5.6s, output queue size 311
progress 15% @chr3:13000001, elapsed 0.1s, est remaining 0.7s, peak mem 423MB, user 0.3s, sys 8.7s, output queue size 473
progress 20% @chr4:3000001, elapsed 0.2s, est remaining 0.7s, peak mem 423MB, user 0.4s, sys 11.7s, output queue size 635
progress 25% @chr4:141000001, elapsed 0.2s, est remaining 0.6s, peak mem 423MB, user 0.5s, sys 14.6s, output queue size 791
progress 30% @chr5:140000001, elapsed 0.2s, est remaining 0.6s, peak mem 423MB, user 0.6s, sys 17.6s, output queue size 953
progress 35% @chr6:152000001, elapsed 0.3s, est remaining 0.5s, peak mem 423MB, user 0.7s, sys 20.5s, output queue size 1113
progress 40% @chr7:132000001, elapsed 0.3s, est remaining 0.5s, peak mem 423MB, user 0.8s, sys 23.2s, output queue size 1275
progress 45% @chr9:6000001, elapsed 0.3s, est remaining 0.4s, peak mem 423MB, user 0.9s, sys 26.0s, output queue size 1437
progress 50% @chr10:32000001, elapsed 0.4s, est remaining 0.4s, peak mem 423MB, user 1.0s, sys 28.8s, output queue size 1598
progress 55% @chr11:52000001, elapsed 0.4s, est remaining 0.3s, peak mem 423MB, user 1.1s, sys 31.8s, output queue size 1759
progress 60% @chr12:75000001, elapsed 0.4s, est remaining 0.3s, peak mem 423MB, user 1.1s, sys 34.7s, output queue size 1922
progress 65% @chr13:107000001, elapsed 0.5s, est remaining 0.3s, peak mem 423MB, user 1.3s, sys 37.5s, output queue size 2083
progress 70% @chr13:74000001, elapsed 0.5s, est remaining 0.2s, peak mem 423MB, user 1.4s, sys 40.4s, output queue size 2245
progress 75% @chr17:32000001, elapsed 0.6s, est remaining 0.2s, peak mem 423MB, user 1.4s, sys 43.2s, output queue size 2407
progress 80% @chr19:2000001, elapsed 0.6s, est remaining 0.1s, peak mem 423MB, user 1.5s, sys 46.3s, output queue size 2568
progress 85% @chr22:35000001, elapsed 0.6s, est remaining 0.1s, peak mem 423MB, user 1.6s, sys 49.2s, output queue size 2731
progress 90% @chrX:105000001, elapsed 0.7s, est remaining 0.1s, peak mem 423MB, user 1.8s, sys 52.4s, output queue size 2880
progress 95% @chr6_GL000251v2_alt:4000001, elapsed 0.7s, est remaining 0.0s, peak mem 423MB, user 1.9s, sys 55.4s, output queue size 3381
progress 100% @HLA-DRB1*03:01:01:01:1, elapsed 0.9s, est remaining 0.0s, peak mem 424MB, user 2.1s, sys 60.6s, output queue size 6100
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 192 max 192
algo: TNfilter
license: sentieon:TNhaplotyper=192
input file size: 78467
output file size: 63293
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 861 calls 0.006 user 0.000 sys 0.027 real
"predict_filter": 287 calls 0.005 user 0.011 sys 0.031 real
advance: 3219322 calls 0.390 user 27.588 sys 35.833 real
done: 1 calls 0.000 user 0.000 sys 0.003 real
execute: 1 calls 0.002 user 0.003 sys 1.023 real
fetch_ref: 768 calls 0.010 user 0.030 sys 0.462 real
idle: 20057 calls 0.462 user 0.084 sys 294.890 real
init: 1 calls 0.258 user 0.125 sys 0.472 real
overall: 445349888 mem 3.021 user 63.362 sys 2.532 real