succeeded NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet) 4s 3s 0s 0s 0 bytes 70% 78.2 KB 2.4 KB 0 bytes 4.0 KB 1
succeeded NFCORE_SAREK:SAREK:AGGREGATE_VARIANT_QC (variant_qc_aggregation) 14s 12s 0s 1s 18.8 MB 100% 2.1 MB 10.2 KB 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNFILTER (HCC1395_BL) 15s 3s 2s 9s 346.0 MB 1455% 13.0 MB 315.7 KB 0 bytes 25.4 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNFILTER (Sig_18_Blood) 17s 5s 1s 10s 124.9 MB 508% 13.3 MB 289.4 KB 0 bytes 25.4 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNHAPLOTYPER2 (HCC1395_BL) 24s 1s 3s 19s 388.4 MB 707% 633.0 MB 361.5 KB 2.8 MB 8.0 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNHAPLOTYPER2 (Sig_18_Blood) 25s 2s 3s 19s 487.9 MB 789% 707.4 MB 430.8 KB 75.9 MB 8.1 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BCFTOOLS_STRIP_FILTER (HCC1395_BL;tnseq) 9s 7s - - 22.1 MB 4006% 131.0 KB 20.8 KB 0 bytes 32.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BCFTOOLS_STRIP_FILTER (Sig_18_Blood;tnseq) 4s 3s - - 14.1 MB 1249% 122.8 KB 20.8 KB 0 bytes 32.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_NORM (HCC1395_BL) 23s 7s 7s 8s 34.0 MB 284% 3.0 GB 209.2 KB 0 bytes 220.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_NORM (Sig_18_Blood) 23s 7s 7s 8s 34.3 MB 271% 3.0 GB 216.4 KB 0 bytes 228.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_SORT (HCC1395_BL) 3s 2s 1s 0s 24.7 MB 7018% 574.6 KB 467.3 KB 0 bytes 476.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_SORT (Sig_18_Blood) 4s 2s - - 18.6 MB 7962% 632.0 KB 524.6 KB 0 bytes 536.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_PON:BCFTOOLS_NORM (chip_pon) 29s 11s 8s 9s 41.1 MB 259% 4.0 GB 5.5 MB 0 bytes 5.5 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_PON:BCFTOOLS_SORT (chip_pon) 5s 2s 2s 1s 135.2 MB 712% 43.8 MB 44.1 MB 0 bytes 44.1 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_GERMLINE:BCFTOOLS_NORM (HCC1395_BL) 20s 3s 8s 8s 33.9 MB 202% 3.0 GB 198.5 KB 0 bytes 208.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_GERMLINE:BCFTOOLS_NORM (Sig_18_Blood) 20s 2s 8s 9s 34.1 MB 197% 3.0 GB 201.0 KB 0 bytes 212.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_GERMLINE:BCFTOOLS_SORT (HCC1395_BL) 4s 2s - - 23.8 MB 5046% 464.9 KB 353.5 KB 0 bytes 364.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_GERMLINE:BCFTOOLS_SORT (Sig_18_Blood) 4s 2s - - 3.1 MB 3252% 478.5 KB 364.2 KB 0 bytes 376.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:PRE_FILTER_CHIP_CANDIDATES (HCC1395_BL) 4s 1s 0s 2s 14.4 MB 759% 12.7 MB 75.7 KB 0 bytes 92.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:PRE_FILTER_CHIP_CANDIDATES (Sig_18_Blood) 3s 1s 0s 1s 14.3 MB 1537% 12.8 MB 83.5 KB 0 bytes 100.0 KB 1
326 items found |
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