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[INFO] Cohort blacklist: 68611 positions
[INFO] Gene-family blacklist: 76473 positions
[INFO] ENCODE blacklist: 636 intervals
[INFO] Gene tiers: 19423 genes, max_tier=2
[INFO] Pre-filter: 0 PASS, 291 FAIL, 291 total
[INFO] Survivors BED: 0 sites written to HCC1395_BL.survivors.bed
[INFO]   no_functional_impact: 212
[INFO]   hard_filter_reject: 50
[INFO]   cohort_blacklist: 18
[INFO]   gene_not_in_universe: 9
[INFO]   pon_artifact: 1
[INFO]   gene_family_blacklist: 1