HCC1395_BL_gam_stats.json - Workdir - NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_NORMALIZE (HCC1395_BL)

File Info

Filename: HCC1395_BL_gam_stats.json
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/0aaf0624490f9e83b88a7a2f6dff9a/HCC1395_BL_gam_stats.json
Size: 630 bytes
Task: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_NORMALIZE (HCC1395_BL)
Attempt

Content

{
  "sample_id": "HCC1395_BL",
  "specimen_id": "HCC1395_tumor_vs_HCC1395_BL",
  "flowcell": "unknown",
  "sample_type": "normal",
  "r2": 0.9787809361691701,
  "partial_range_gc_probe": 2.242765664142441,
  "partial_range_median_insert_size": 2.173998984549042,
  "partial_range_qcd": 1.5656819038292293,
  "partial_range_probe_coverage_median": 3.196474271713244,
  "partial_range_dup_rate": 3.1119099637204,
  "partial_var_gc_probe": 0.2915165658507573,
  "partial_var_median_insert_size": 0.15739947027248355,
  "partial_var_qcd": 0.008637012512532764,
  "partial_var_probe_coverage_median": 0.2574398523903989,
  "partial_var_dup_rate": 0.2850070989738274
}