cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample HCC1395_BL --max_event_count 5 -v HCC1395_BL.tnseq_tumor_only.vcf.gz --contamination HCC1395_BL.tnseq_tumor_only.contamination_data.tsv --tumor_segments HCC1395_BL.tnseq_tumor_only.segments --orientation_priors HCC1395_BL.tnseq_tumor_only.orientation_data.tsv HCC1395_BL.tnseq_tumor_only.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:30000001, elapsed 0.0s, est remaining 0.8s, peak mem 287MB, user 0.2s, sys 1.8s, output queue size 142
progress 10% @chr1:99000001, elapsed 0.1s, est remaining 0.7s, peak mem 287MB, user 0.3s, sys 3.8s, output queue size 231
progress 15% @chr3:99000001, elapsed 0.1s, est remaining 0.8s, peak mem 287MB, user 0.5s, sys 4.4s, output queue size 393
progress 20% @chr3:176000001, elapsed 0.2s, est remaining 0.7s, peak mem 288MB, user 0.7s, sys 5.3s, output queue size 555
progress 25% @chr2:174000001, elapsed 0.2s, est remaining 0.7s, peak mem 288MB, user 0.9s, sys 7.3s, output queue size 638
progress 30% @chr5:148000001, elapsed 0.2s, est remaining 0.6s, peak mem 288MB, user 1.0s, sys 9.4s, output queue size 799
progress 35% @chr6:119000001, elapsed 0.3s, est remaining 0.5s, peak mem 288MB, user 1.1s, sys 11.5s, output queue size 960
progress 40% @chr7:134000001, elapsed 0.3s, est remaining 0.5s, peak mem 288MB, user 1.2s, sys 13.1s, output queue size 1122
progress 45% @chr9:17000001, elapsed 0.4s, est remaining 0.4s, peak mem 288MB, user 1.3s, sys 14.6s, output queue size 1283
progress 50% @chr9:102000001, elapsed 0.4s, est remaining 0.4s, peak mem 288MB, user 1.4s, sys 16.5s, output queue size 1444
progress 55% @chr11:75000001, elapsed 0.4s, est remaining 0.4s, peak mem 288MB, user 1.5s, sys 17.5s, output queue size 252
progress 60% @chr12:73000001, elapsed 0.5s, est remaining 0.3s, peak mem 288MB, user 1.7s, sys 18.5s, output queue size 413
progress 65% @chr14:3000001, elapsed 0.5s, est remaining 0.3s, peak mem 288MB, user 1.7s, sys 18.9s, output queue size 575
progress 70% @chr15:14000001, elapsed 0.6s, est remaining 0.3s, peak mem 288MB, user 1.9s, sys 20.3s, output queue size 737
progress 75% @chr16:66000001, elapsed 0.6s, est remaining 0.2s, peak mem 288MB, user 2.0s, sys 22.6s, output queue size 899
progress 80% @chr18:67000001, elapsed 0.7s, est remaining 0.2s, peak mem 288MB, user 2.2s, sys 24.4s, output queue size 1061
progress 85% @chr21:19000001, elapsed 0.7s, est remaining 0.1s, peak mem 288MB, user 2.2s, sys 26.3s, output queue size 1223
progress 90% @chrX:104000001, elapsed 0.7s, est remaining 0.1s, peak mem 288MB, user 2.4s, sys 27.5s, output queue size 1384
progress 95% @chr4_KI270789v1_alt:1, elapsed 0.8s, est remaining 0.0s, peak mem 288MB, user 2.5s, sys 29.5s, output queue size 1725
progress 100% @HLA-DRB1*16:02:01:1, elapsed 0.9s, est remaining 0.0s, peak mem 289MB, user 2.6s, sys 32.6s, output queue size 4971
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
signature: 000606a6
features: 1f8bfbff fffa320b
extended: f1bf07ab 00407f5a
amd bits: 2c100800 00000121
brand: Intel(R) Xeon(R) Platinum 8375C CPU @ 2.90GHz
threads: 128 max 128
algo: TNfilter
license: sentieon:TNhaplotyper=128
input file size: 58752
output file size: 46435
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 684 calls 0.002 user 0.000 sys 0.024 real
"predict_filter": 228 calls 0.008 user 0.002 sys 0.020 real
advance: 3219322 calls 0.677 user 13.718 sys 18.152 real
done: 1 calls 0.003 user 0.000 sys 0.003 real
execute: 1 calls 0.001 user 0.010 sys 1.069 real
fetch_ref: 672 calls 0.002 user 0.025 sys 0.064 real
idle: 19865 calls 0.448 user 0.080 sys 201.214 real
init: 1 calls 0.283 user 0.122 sys 0.524 real
overall: 303517696 mem 3.976 user 34.095 sys 2.567 real