Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/e4e99c4b63e2970d39f2d7916ee16e/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/test_sarek/end_to_end_regression/output_runs/dev_latest_regression_eks__47a821d--20260221-174447/preprocessing/recalibrated/Sig_18_Blood/Sig_18_Blood.recal.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/33/dfba5023858dcd0de6adb59a747e2f/custom_Sig_18_tumor_normal.manta.candidate_small_indels.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/33/dfba5023858dcd0de6adb59a747e2f/custom_Sig_18_tumor_normal.manta.candidate_small_indels.vcf.gz.tbi
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/test_sarek/end_to_end_regression/output_runs/dev_latest_regression_eks__47a821d--20260221-174447/preprocessing/recalibrated/Sig_18_tissue/Sig_18_tissue.recal.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/regression_padded_intervals/scatter/chr21_5117003-5117331.bed.gz.tbi
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/test_sarek/end_to_end_regression/output_runs/dev_latest_regression_eks__47a821d--20260221-174447/preprocessing/recalibrated/Sig_18_Blood/Sig_18_Blood.recal.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/regression_padded_intervals/scatter/chr21_5117003-5117331.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/e4e99c4b63e2970d39f2d7916ee16e/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/test_sarek/end_to_end_regression/output_runs/dev_latest_regression_eks__47a821d--20260221-174447/preprocessing/recalibrated/Sig_18_tissue/Sig_18_tissue.recal.bam
==> STAGING COMPLETE (12 inputs)

[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXOKYvMq/chr21_5117003-5117331.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXOKYvMq/chr21_5117003-5117331.bed.gz.tbi

Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXOKYvMq/chr21_5117003-5117331.bed.gz.tbi
[2026-06-04T19:33:22.678433Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T19:33:22.679475Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-04T19:33:22.679505Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T19:33:22.679512Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T19:33:22.679518Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXOKYvMq'
[2026-06-04T19:33:22.679524Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-04T19:33:22.679533Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T19:33:22.679539Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-04T19:33:22.679546Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-04T19:33:22.679551Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-04T19:33:22.679558Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T19:33:22.679563Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T19:33:22.679569Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T19:33:22.679576Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T19:33:22.680119Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T19:33:22.680263Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-04T19:33:22.686176Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-04T19:33:22.687010Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T19:33:22.687210Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-04T19:33:22.687587Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-04T19:33:22.687891Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T19:33:22.688876Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:33:22.688988Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:33:22.689242Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-06-04T19:33:22.689587Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T19:33:22.689818Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:33:22.690147Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' to sub-workflow 'CallGenome'
[2026-06-04T19:33:22.690876Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:33:22.691123Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' to sub-workflow 'CallGenome'
[2026-06-04T19:33:22.694075Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-04T19:33:22.711677Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:33:22.711881Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' to sub-workflow 'CallGenome'
[2026-06-04T19:33:22.712052Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-04T19:33:22.712198Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:33:22.712310Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:33:22.712422Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:33:22.712526Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-04T19:33:22.712642Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-04T19:33:22.712746Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-04T19:33:22.712816Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-04T19:33:22.734636Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T19:33:22.734926Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:33:22.735321Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:33:22.735799Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:33:22.736246Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:33:22.741677Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0003] Task initiated on local node
[2026-06-04T19:33:22.743688Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0002] Task initiated on local node
[2026-06-04T19:33:22.744105Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0001] Task initiated on local node
[2026-06-04T19:33:22.747022Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0000] Task initiated on local node
[2026-06-04T19:33:22.851027Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:33:22.851517Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' from sub-workflow 'CallGenome'
[2026-06-04T19:33:22.854976Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0003] Task initiated on local node
[2026-06-04T19:33:22.883902Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' launched from sub-workflow 'CallGenome'
[2026-06-04T19:33:26.362263Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:33:26.362691Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:33:26.365606Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_020_chr21_0000] Task initiated on local node
[2026-06-04T19:33:26.426822Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:33:26.427243Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-06-04T19:33:26.430018Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0000] Task initiated on local node
[2026-06-04T19:33:26.491371Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-06-04T19:33:29.711648Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:33:29.712096Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' from sub-workflow 'CallGenome'
[2026-06-04T19:33:29.714558Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0001] Task initiated on local node
[2026-06-04T19:33:29.776026Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' launched from sub-workflow 'CallGenome'
[2026-06-04T19:34:04.701216Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:34:04.702000Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' from sub-workflow 'CallGenome'
[2026-06-04T19:34:04.704861Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0002] Task initiated on local node
[2026-06-04T19:34:04.766076Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' launched from sub-workflow 'CallGenome'
[2026-06-04T19:34:04.766364Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-04T19:34:04.766563Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:34:04.766843Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-04T19:34:04.767216Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:34:04.770700Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-04T19:34:04.772978Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-04T19:34:04.808386Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-04T19:34:04.832652Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:34:04.832739Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-04T19:34:04.832774Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:34:04.833058Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:34:04.833401Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-04T19:34:04.837021Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-04T19:34:04.837343Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-04T19:34:04.897665Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:34:04.897748Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-04T19:34:04.898022Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-04T19:34:04.900828Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-04T19:34:04.962192Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-04T19:34:10.829160Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-04T19:34:25.799271Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-04T19:34:25.799271Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [WorkflowRunner] 
[2026-06-04T19:34:25.799271Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-04T19:34:25.799395Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [WorkflowRunner] 
[2026-06-04T19:34:25.799408Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T19:34:25.799444Z] [nf-73e4e99c4b63e2970d39f2d7916ee16e-9080a-bb2kl] [819_1] [WorkflowRunner] Elapsed time for full workflow: 63 sec