[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXX0Sxczj/xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_chr21.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXX0Sxczj/xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_chr21.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXX0Sxczj/xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_chr21.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXX0Sxczj/xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_chr21.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXX0Sxczj/xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_chr21.bed.gz.tbi
[2026-06-04T19:31:48.524181Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T19:31:48.524834Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [WorkflowRunner] pyFlowClientWorkflowClass: MantaWorkflow
[2026-06-04T19:31:48.524847Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T19:31:48.524851Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T19:31:48.524855Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX0Sxczj'
[2026-06-04T19:31:48.524862Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/manta/runWorkflow.py -m local -j 14'
[2026-06-04T19:31:48.524869Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T19:31:48.524876Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [WorkflowRunner] [RunParameters] nCores: 14
[2026-06-04T19:31:48.524882Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-04T19:31:48.524888Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/manta/workspace/pyflow.data
[2026-06-04T19:31:48.524895Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T19:31:48.524900Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T19:31:48.524904Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T19:31:48.524909Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T19:31:48.525322Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T19:31:48.525405Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [MantaWorkflow] Initiating Manta workflow version: 1.6.0
[2026-06-04T19:31:48.525618Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [WorkflowRunner] Adding command task 'getAlignmentStats_makeTmpDir' to master workflow
[2026-06-04T19:31:48.526475Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Launching command task: 'getAlignmentStats_makeTmpDir' from master workflow
[2026-06-04T19:31:48.526645Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [WorkflowRunner] Adding command task 'getAlignmentStats_generateStats_000' to master workflow
[2026-06-04T19:31:48.526983Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [WorkflowRunner] Adding command task 'getAlignmentStats_generateStats_001' to master workflow
[2026-06-04T19:31:48.527187Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [WorkflowRunner] Adding command task 'getAlignmentStats_mergeStats' to master workflow
[2026-06-04T19:31:48.527423Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [WorkflowRunner] Adding command task 'getAlignmentStats_removeTmpDir' to master workflow
[2026-06-04T19:31:48.527606Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [WorkflowRunner] Adding command task 'summarizeStats' to master workflow
[2026-06-04T19:31:48.527721Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [WorkflowRunner] Adding command task 'makeGraphTmpDir' to master workflow
[2026-06-04T19:31:48.530025Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskRunner:getAlignmentStats_makeTmpDir] Task initiated on local node
[2026-06-04T19:31:48.561292Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Completed command task: 'getAlignmentStats_makeTmpDir' launched from master workflow
[2026-06-04T19:31:48.561842Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Launching command task: 'getAlignmentStats_generateStats_001' from master workflow
[2026-06-04T19:31:48.562316Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Launching command task: 'getAlignmentStats_generateStats_000' from master workflow
[2026-06-04T19:31:48.565160Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskRunner:getAlignmentStats_generateStats_001] Task initiated on local node
[2026-06-04T19:31:48.566047Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskRunner:getAlignmentStats_generateStats_000] Task initiated on local node
[2026-06-04T19:31:48.824790Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [WorkflowRunner] Adding command task 'makeLocusGraph_chromId_020_chr21-5117103-5117231_0000_to_chromId_020_chr21-39269899-39270033_0000' to master workflow
[2026-06-04T19:31:49.079414Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [WorkflowRunner] Adding command task 'makeLocusGraph_chromId_020_chr21-39270283-39270433_0000_to_chromId_020_chr21-46664295-46664374_0000' to master workflow
[2026-06-04T19:31:49.079703Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [WorkflowRunner] Adding sub-workflow task 'mergeLocusGraphInputList' to master workflow
[2026-06-04T19:31:49.079795Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [WorkflowRunner] Adding command task 'mergeLocusGraph' to master workflow
[2026-06-04T19:31:49.079865Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [WorkflowRunner] Adding command task 'checkLocusGraph' to master workflow
[2026-06-04T19:31:49.079931Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [WorkflowRunner] Adding command task 'removeTmpDir' to master workflow
[2026-06-04T19:31:49.080002Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [WorkflowRunner] Adding command task 'locusGraphStats' to master workflow
[2026-06-04T19:31:49.080301Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [WorkflowRunner] Adding command task 'makeHyGenDir' to master workflow
[2026-06-04T19:31:49.080441Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [WorkflowRunner] Adding command task 'generateCandidateSV_0000' to master workflow
[2026-06-04T19:31:49.080563Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [WorkflowRunner] Adding command task 'fixVcfHeader_sortCandidateSV' to master workflow
[2026-06-04T19:31:49.080695Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [WorkflowRunner] Adding sub-workflow task 'sortCandidateSVInputList' to master workflow
[2026-06-04T19:31:49.080768Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [WorkflowRunner] Adding command task 'sort_sortCandidateSV' to master workflow
[2026-06-04T19:31:49.080844Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [WorkflowRunner] Adding command task 'tabix_sortCandidateSV' to master workflow
[2026-06-04T19:31:49.080925Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [WorkflowRunner] Adding command task 'fixVcfHeader_sortDiploidSV' to master workflow
[2026-06-04T19:31:49.081034Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [WorkflowRunner] Adding sub-workflow task 'sortDiploidSVInputList' to master workflow
[2026-06-04T19:31:49.081120Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [WorkflowRunner] Adding command task 'sort_sortDiploidSV' to master workflow
[2026-06-04T19:31:49.081191Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [WorkflowRunner] Adding command task 'tabix_sortDiploidSV' to master workflow
[2026-06-04T19:31:49.081257Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [WorkflowRunner] Adding command task 'fixVcfHeader_sortSomaticSV' to master workflow
[2026-06-04T19:31:49.081362Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [WorkflowRunner] Adding sub-workflow task 'sortSomaticSVInputList' to master workflow
[2026-06-04T19:31:49.081430Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [WorkflowRunner] Adding command task 'sort_sortSomaticSV' to master workflow
[2026-06-04T19:31:49.081501Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [WorkflowRunner] Adding command task 'tabix_sortSomaticSV' to master workflow
[2026-06-04T19:31:49.081576Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [WorkflowRunner] Adding command task 'extractSmallIndels' to master workflow
[2026-06-04T19:31:49.081641Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [WorkflowRunner] Adding command task 'extractSmallIndels_tabix' to master workflow
[2026-06-04T19:31:49.081739Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [WorkflowRunner] Adding sub-workflow task 'sortEdgeRuntimeLogsInputList' to master workflow
[2026-06-04T19:31:49.081810Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [WorkflowRunner] Adding command task 'sortEdgeRuntimeLogs' to master workflow
[2026-06-04T19:31:49.081855Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T19:31:50.508058Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Completed command task: 'getAlignmentStats_generateStats_000' launched from master workflow
[2026-06-04T19:31:53.628338Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Completed command task: 'getAlignmentStats_generateStats_001' launched from master workflow
[2026-06-04T19:31:53.628885Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Launching command task: 'getAlignmentStats_mergeStats' from master workflow
[2026-06-04T19:31:53.631902Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskRunner:getAlignmentStats_mergeStats] Task initiated on local node
[2026-06-04T19:31:53.660820Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Completed command task: 'getAlignmentStats_mergeStats' launched from master workflow
[2026-06-04T19:31:53.661354Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Launching command task: 'summarizeStats' from master workflow
[2026-06-04T19:31:53.661658Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Launching command task: 'makeGraphTmpDir' from master workflow
[2026-06-04T19:31:53.661934Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Launching command task: 'getAlignmentStats_removeTmpDir' from master workflow
[2026-06-04T19:31:53.665706Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskRunner:makeGraphTmpDir] Task initiated on local node
[2026-06-04T19:31:53.666115Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskRunner:getAlignmentStats_removeTmpDir] Task initiated on local node
[2026-06-04T19:31:53.666692Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskRunner:summarizeStats] Task initiated on local node
[2026-06-04T19:31:53.695892Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Completed command task: 'summarizeStats' launched from master workflow
[2026-06-04T19:31:53.695943Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Completed command task: 'makeGraphTmpDir' launched from master workflow
[2026-06-04T19:31:53.695967Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Completed command task: 'getAlignmentStats_removeTmpDir' launched from master workflow
[2026-06-04T19:31:53.696431Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Launching command task: 'makeLocusGraph_chromId_020_chr21-5117103-5117231_0000_to_chromId_020_chr21-39269899-39270033_0000' from master workflow
[2026-06-04T19:31:53.696950Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Launching command task: 'makeLocusGraph_chromId_020_chr21-39270283-39270433_0000_to_chromId_020_chr21-46664295-46664374_0000' from master workflow
[2026-06-04T19:31:53.719358Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskRunner:makeLocusGraph_chromId_020_chr21-5117103-5117231_0000_to_chromId_020_chr21-39269899-39270033_0000] Task initiated on local node
[2026-06-04T19:31:53.719996Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskRunner:makeLocusGraph_chromId_020_chr21-39270283-39270433_0000_to_chromId_020_chr21-46664295-46664374_0000] Task initiated on local node
[2026-06-04T19:32:04.964309Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Completed command task: 'makeLocusGraph_chromId_020_chr21-5117103-5117231_0000_to_chromId_020_chr21-39269899-39270033_0000' launched from master workflow
[2026-06-04T19:32:12.284076Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Completed command task: 'makeLocusGraph_chromId_020_chr21-39270283-39270433_0000_to_chromId_020_chr21-46664295-46664374_0000' launched from master workflow
[2026-06-04T19:32:12.285129Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Launching sub-workflow task: 'mergeLocusGraphInputList' from master workflow
[2026-06-04T19:32:12.285483Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskRunner:mergeLocusGraphInputList] Starting task specification for sub-workflow
[2026-06-04T19:32:12.285734Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskRunner:mergeLocusGraphInputList] Finished task specification for sub-workflow
[2026-06-04T19:32:12.286881Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Completed sub-workflow task: 'mergeLocusGraphInputList' launched from master workflow
[2026-06-04T19:32:12.287431Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Launching command task: 'mergeLocusGraph' from master workflow
[2026-06-04T19:32:12.290437Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskRunner:mergeLocusGraph] Task initiated on local node
[2026-06-04T19:32:12.351755Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Completed command task: 'mergeLocusGraph' launched from master workflow
[2026-06-04T19:32:12.352260Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Launching command task: 'locusGraphStats' from master workflow
[2026-06-04T19:32:12.352788Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Launching command task: 'checkLocusGraph' from master workflow
[2026-06-04T19:32:12.353217Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Launching command task: 'removeTmpDir' from master workflow
[2026-06-04T19:32:12.358012Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskRunner:removeTmpDir] Task initiated on local node
[2026-06-04T19:32:12.358426Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskRunner:locusGraphStats] Task initiated on local node
[2026-06-04T19:32:12.386373Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Completed command task: 'removeTmpDir' launched from master workflow
[2026-06-04T19:32:12.387781Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskRunner:checkLocusGraph] Task initiated on local node
[2026-06-04T19:32:12.390153Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Completed command task: 'locusGraphStats' launched from master workflow
[2026-06-04T19:32:12.393742Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Completed command task: 'checkLocusGraph' launched from master workflow
[2026-06-04T19:32:12.394161Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Launching command task: 'makeHyGenDir' from master workflow
[2026-06-04T19:32:12.396679Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskRunner:makeHyGenDir] Task initiated on local node
[2026-06-04T19:32:12.426021Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Completed command task: 'makeHyGenDir' launched from master workflow
[2026-06-04T19:32:12.426498Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Launching command task: 'generateCandidateSV_0000' from master workflow
[2026-06-04T19:32:12.429434Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskRunner:generateCandidateSV_0000] Task initiated on local node
[2026-06-04T19:32:15.146845Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Completed command task: 'generateCandidateSV_0000' launched from master workflow
[2026-06-04T19:32:15.147308Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Launching sub-workflow task: 'sortEdgeRuntimeLogsInputList' from master workflow
[2026-06-04T19:32:15.147704Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskRunner:sortEdgeRuntimeLogsInputList] Starting task specification for sub-workflow
[2026-06-04T19:32:15.147997Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Launching command task: 'fixVcfHeader_sortSomaticSV' from master workflow
[2026-06-04T19:32:15.148382Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskRunner:sortEdgeRuntimeLogsInputList] Finished task specification for sub-workflow
[2026-06-04T19:32:15.148674Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Launching command task: 'fixVcfHeader_sortCandidateSV' from master workflow
[2026-06-04T19:32:15.149162Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Launching command task: 'fixVcfHeader_sortDiploidSV' from master workflow
[2026-06-04T19:32:15.151548Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskRunner:fixVcfHeader_sortSomaticSV] Task initiated on local node
[2026-06-04T19:32:15.151805Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Completed sub-workflow task: 'sortEdgeRuntimeLogsInputList' launched from master workflow
[2026-06-04T19:32:15.152677Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Launching command task: 'sortEdgeRuntimeLogs' from master workflow
[2026-06-04T19:32:15.155206Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskRunner:fixVcfHeader_sortDiploidSV] Task initiated on local node
[2026-06-04T19:32:15.157162Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskRunner:fixVcfHeader_sortCandidateSV] Task initiated on local node
[2026-06-04T19:32:15.158200Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskRunner:sortEdgeRuntimeLogs] Task initiated on local node
[2026-06-04T19:32:15.219677Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Completed command task: 'fixVcfHeader_sortSomaticSV' launched from master workflow
[2026-06-04T19:32:15.219755Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Completed command task: 'fixVcfHeader_sortDiploidSV' launched from master workflow
[2026-06-04T19:32:15.219780Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Completed command task: 'sortEdgeRuntimeLogs' launched from master workflow
[2026-06-04T19:32:15.219805Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Completed command task: 'fixVcfHeader_sortCandidateSV' launched from master workflow
[2026-06-04T19:32:15.220071Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Launching sub-workflow task: 'sortCandidateSVInputList' from master workflow
[2026-06-04T19:32:15.220507Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskRunner:sortCandidateSVInputList] Starting task specification for sub-workflow
[2026-06-04T19:32:15.220700Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Launching sub-workflow task: 'sortDiploidSVInputList' from master workflow
[2026-06-04T19:32:15.220993Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskRunner:sortDiploidSVInputList] Starting task specification for sub-workflow
[2026-06-04T19:32:15.221150Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskRunner:sortCandidateSVInputList] Finished task specification for sub-workflow
[2026-06-04T19:32:15.221272Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Launching sub-workflow task: 'sortSomaticSVInputList' from master workflow
[2026-06-04T19:32:15.221517Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskRunner:sortSomaticSVInputList] Starting task specification for sub-workflow
[2026-06-04T19:32:15.221685Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskRunner:sortDiploidSVInputList] Finished task specification for sub-workflow
[2026-06-04T19:32:15.221905Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskRunner:sortSomaticSVInputList] Finished task specification for sub-workflow
[2026-06-04T19:32:15.221989Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Completed sub-workflow task: 'sortCandidateSVInputList' launched from master workflow
[2026-06-04T19:32:15.222124Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Completed sub-workflow task: 'sortDiploidSVInputList' launched from master workflow
[2026-06-04T19:32:15.222245Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Completed sub-workflow task: 'sortSomaticSVInputList' launched from master workflow
[2026-06-04T19:32:15.222440Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Launching command task: 'sort_sortCandidateSV' from master workflow
[2026-06-04T19:32:15.222652Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Launching command task: 'sort_sortDiploidSV' from master workflow
[2026-06-04T19:32:15.223161Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Launching command task: 'sort_sortSomaticSV' from master workflow
[2026-06-04T19:32:15.225811Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskRunner:sort_sortCandidateSV] Task initiated on local node
[2026-06-04T19:32:15.228584Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskRunner:sort_sortDiploidSV] Task initiated on local node
[2026-06-04T19:32:15.229543Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskRunner:sort_sortSomaticSV] Task initiated on local node
[2026-06-04T19:32:15.290915Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Completed command task: 'sort_sortCandidateSV' launched from master workflow
[2026-06-04T19:32:15.290998Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Completed command task: 'sort_sortSomaticSV' launched from master workflow
[2026-06-04T19:32:15.291313Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Launching command task: 'tabix_sortCandidateSV' from master workflow
[2026-06-04T19:32:15.291575Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Launching command task: 'extractSmallIndels' from master workflow
[2026-06-04T19:32:15.291961Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Launching command task: 'tabix_sortSomaticSV' from master workflow
[2026-06-04T19:32:15.295704Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskRunner:tabix_sortCandidateSV] Task initiated on local node
[2026-06-04T19:32:15.297606Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskRunner:extractSmallIndels] Task initiated on local node
[2026-06-04T19:32:15.298643Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskRunner:tabix_sortSomaticSV] Task initiated on local node
[2026-06-04T19:32:15.302065Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Completed command task: 'sort_sortDiploidSV' launched from master workflow
[2026-06-04T19:32:15.302370Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Launching command task: 'tabix_sortDiploidSV' from master workflow
[2026-06-04T19:32:15.304715Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskRunner:tabix_sortDiploidSV] Task initiated on local node
[2026-06-04T19:32:15.334261Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Completed command task: 'tabix_sortCandidateSV' launched from master workflow
[2026-06-04T19:32:15.334349Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Completed command task: 'tabix_sortSomaticSV' launched from master workflow
[2026-06-04T19:32:15.334379Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Completed command task: 'tabix_sortDiploidSV' launched from master workflow
[2026-06-04T19:32:15.350031Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Completed command task: 'extractSmallIndels' launched from master workflow
[2026-06-04T19:32:15.350283Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Launching command task: 'extractSmallIndels_tabix' from master workflow
[2026-06-04T19:32:15.352951Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskRunner:extractSmallIndels_tabix] Task initiated on local node
[2026-06-04T19:32:15.382224Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [TaskManager] Completed command task: 'extractSmallIndels_tabix' launched from master workflow
[2026-06-04T19:32:22.194962Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [WorkflowRunner] Manta workflow successfully completed.
[2026-06-04T19:32:22.194962Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [WorkflowRunner] 
[2026-06-04T19:32:22.194962Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [WorkflowRunner] 	workflow version: 1.6.0
[2026-06-04T19:32:22.195032Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [WorkflowRunner] 
[2026-06-04T19:32:22.195039Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T19:32:22.195043Z] [nf-17a9eaa533604705ba9699388d8bdd89-af75c-cr7t9] [644_1] [WorkflowRunner] Elapsed time for full workflow: 33 sec