cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample Sig_18_tissue --normal_sample Sig_18_Blood --max_event_count 5 -v custom_Sig_18_tumor_normal.tnseq.vcf.gz --contamination custom_Sig_18_tumor_normal.tnseq.contamination_data.tsv --tumor_segments custom_Sig_18_tumor_normal.tnseq.segments --orientation_priors custom_Sig_18_tumor_normal.tnseq.orientation_data.tsv custom_Sig_18_tumor_normal.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:248000001, elapsed 0.1s, est remaining 1.2s, peak mem 423MB, user 0.3s, sys 2.1s, output queue size 153
progress 10% @chr2:39000001, elapsed 0.1s, est remaining 0.9s, peak mem 423MB, user 0.4s, sys 5.1s, output queue size 314
progress 15% @chr2:215000001, elapsed 0.1s, est remaining 0.8s, peak mem 423MB, user 0.6s, sys 8.1s, output queue size 451
progress 20% @chr4:66000001, elapsed 0.2s, est remaining 0.7s, peak mem 423MB, user 0.8s, sys 11.2s, output queue size 466
progress 25% @chr5:34000001, elapsed 0.2s, est remaining 0.6s, peak mem 423MB, user 1.0s, sys 14.2s, output queue size 627
progress 30% @chr6:3000001, elapsed 0.2s, est remaining 0.6s, peak mem 423MB, user 1.3s, sys 17.3s, output queue size 789
progress 35% @chr5:141000001, elapsed 0.3s, est remaining 0.5s, peak mem 423MB, user 1.5s, sys 20.4s, output queue size 950
progress 40% @chr8:7000001, elapsed 0.3s, est remaining 0.5s, peak mem 423MB, user 1.7s, sys 23.5s, output queue size 1111
progress 45% @chr7:119000001, elapsed 0.4s, est remaining 0.4s, peak mem 423MB, user 1.9s, sys 26.3s, output queue size 1273
progress 50% @chr10:15000001, elapsed 0.4s, est remaining 0.4s, peak mem 423MB, user 2.1s, sys 29.2s, output queue size 1434
progress 55% @chr11:6000001, elapsed 0.4s, est remaining 0.3s, peak mem 423MB, user 2.3s, sys 32.2s, output queue size 1596
progress 60% @chr12:17000001, elapsed 0.5s, est remaining 0.3s, peak mem 423MB, user 2.5s, sys 35.2s, output queue size 1757
progress 65% @chr4:33000001, elapsed 0.5s, est remaining 0.3s, peak mem 423MB, user 2.6s, sys 38.0s, output queue size 1375
progress 70% @chr15:54000001, elapsed 0.5s, est remaining 0.2s, peak mem 423MB, user 2.8s, sys 41.1s, output queue size 1537
progress 75% @chr16:29000001, elapsed 0.6s, est remaining 0.2s, peak mem 423MB, user 3.0s, sys 44.0s, output queue size 1699
progress 80% @chr19:11000001, elapsed 0.6s, est remaining 0.2s, peak mem 423MB, user 3.3s, sys 47.1s, output queue size 1861
progress 85% @chr22:27000001, elapsed 0.6s, est remaining 0.1s, peak mem 423MB, user 3.5s, sys 50.1s, output queue size 2023
progress 90% @chr9:127000001, elapsed 0.7s, est remaining 0.1s, peak mem 423MB, user 3.7s, sys 53.3s, output queue size 2185
progress 95% @chr19_KI270887v1_alt:1, elapsed 0.7s, est remaining 0.0s, peak mem 423MB, user 3.8s, sys 56.3s, output queue size 2613
progress 100% @HLA-DRB1*11:01:01:1, elapsed 0.8s, est remaining 0.0s, peak mem 424MB, user 4.0s, sys 62.5s, output queue size 5770
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 192 max 192
algo: TNfilter
license: sentieon:TNhaplotyper=192
input file size: 133851
output file size: 96623
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 1710 calls 0.034 user 0.001 sys 0.129 real
"predict_filter": 570 calls 0.005 user 0.010 sys 0.073 real
advance: 3219322 calls 0.738 user 28.393 sys 46.831 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.003 user 0.002 sys 0.868 real
fetch_ref: 1492 calls 0.005 user 0.013 sys 0.184 real
idle: 20057 calls 0.485 user 0.189 sys 312.089 real
init: 1 calls 0.377 user 0.094 sys 0.557 real
overall: 445399040 mem 5.543 user 66.201 sys 2.557 real