File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/2dad0ae5b0bc00c0e70b987604c938/.command.log
Size
1.2 KB
Task
NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_MERGE_CHARACTERISTICS:MERGE_CHIP_PON (Sig_18_Blood)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/885a1c87eaa870681d3ae80a9867e2/Sig_18_Blood.GERMLINE.merged.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/21b26498da326fc1157b293017823e/chip_pon.chip_pon.harmonized.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/2dad0ae5b0bc00c0e70b987604c938/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/2dad0ae5b0bc00c0e70b987604c938/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/21b26498da326fc1157b293017823e/chip_pon.chip_pon.harmonized.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/885a1c87eaa870681d3ae80a9867e2/Sig_18_Blood.GERMLINE.merged.vcf.gz
==> STAGING COMPLETE (6 inputs)

[INFO] Reading target VCF: Sig_18_Blood.GERMLINE.merged.vcf.gz
[INFO] Reading source VCF: chip_pon.chip_pon.harmonized.vcf.gz
[INFO] Adding header fields with prefix 'CHIP_PON' for: FRACTION
[INFO] Building source variant lookup...
[INFO] Found 365410 variants in source VCF
[INFO] Processing target variants and merging characteristics...
[INFO] Complete! Processed 364 variants, matched 297 (81.6%)
[SUCCESS] VCF merging completed successfully!