Work Directory

Task
NFCORE_SAREK:SAREK:MULTIQC
Attempt
1
S3 Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/eea7cffad6ad43857ee9a84a319300

Files (200)

Name Size Modified
.command.begin 6 bytes Jun 04, 2026 1:02 PM
.command.err 7.1 KB Jun 04, 2026 1:02 PM
.command.log 21.1 KB Jun 04, 2026 1:02 PM
.command.out 0 bytes Jun 04, 2026 1:02 PM
.command.run 39.4 KB Jun 04, 2026 1:02 PM
.command.sh 282 bytes Jun 04, 2026 1:02 PM
.command.trace 259 bytes Jun 04, 2026 1:02 PM
.command.yaml 3.4 KB Jun 04, 2026 1:02 PM
.exitcode 1 byte Jun 04, 2026 1:02 PM
multiqc_data/bcftools-stats-subtypes.txt 1.1 KB Jun 04, 2026 1:02 PM
multiqc_data/bcftools_stats_indel-lengths.txt 1.1 KB Jun 04, 2026 1:02 PM
multiqc_data/bcftools_stats_variant_depths.txt 23.0 KB Jun 04, 2026 1:02 PM
multiqc_data/bcftools_stats_vqc_Count_Indels.txt 12.4 KB Jun 04, 2026 1:02 PM
multiqc_data/bcftools_stats_vqc_Count_SNP.txt 12.4 KB Jun 04, 2026 1:02 PM
multiqc_data/bcftools_stats_vqc_Count_Transitions.txt 12.4 KB Jun 04, 2026 1:02 PM
multiqc_data/bcftools_stats_vqc_Count_Transversions.txt 12.4 KB Jun 04, 2026 1:02 PM
multiqc_data/consequences_all__plot_Coding_consequences.txt 910 bytes Jun 04, 2026 1:02 PM
multiqc_data/consequences_all__plot_Consequences_all_.txt 2.0 KB Jun 04, 2026 1:02 PM
multiqc_data/consequences_all__plot_Consequences_most_severe_.txt 1.7 KB Jun 04, 2026 1:02 PM
multiqc_data/llms-full.txt 122.0 KB Jun 04, 2026 1:02 PM
multiqc_data/mosdepth-coverage-per-contig-single.txt 138 bytes Jun 04, 2026 1:02 PM
multiqc_data/mosdepth-cumcoverage-dist-id.txt 27.5 KB Jun 04, 2026 1:02 PM
multiqc_data/mosdepth_cov_dist.txt 22.2 KB Jun 04, 2026 1:02 PM
multiqc_data/mosdepth_cumcov_dist.txt 22.2 KB Jun 04, 2026 1:02 PM
multiqc_data/mosdepth_perchrom.txt 138 bytes Jun 04, 2026 1:02 PM
multiqc_data/multiqc.log 35.7 KB Jun 04, 2026 1:02 PM
multiqc_data/multiqc.parquet 2.4 MB Jun 04, 2026 1:02 PM
multiqc_data/multiqc_bcftools_stats.txt 1.7 KB Jun 04, 2026 1:02 PM
multiqc_data/multiqc_citations.txt 427 bytes Jun 04, 2026 1:02 PM
multiqc_data/multiqc_data.json 2.2 MB Jun 04, 2026 1:02 PM
multiqc_data/multiqc_general_stats.txt 3.3 KB Jun 04, 2026 1:02 PM
multiqc_data/multiqc_samtools_stats.txt 2.7 KB Jun 04, 2026 1:02 PM
multiqc_data/multiqc_snpeff.txt 7.1 KB Jun 04, 2026 1:02 PM
multiqc_data/multiqc_software_versions.txt 4.1 KB Jun 04, 2026 1:02 PM
multiqc_data/multiqc_sources.txt 6.6 KB Jun 04, 2026 1:02 PM
multiqc_data/polyphen_summary_plot.txt 401 bytes Jun 04, 2026 1:02 PM
multiqc_data/position_in_protein_plot.txt 768 bytes Jun 04, 2026 1:02 PM
multiqc_data/samtools-stats-dp.txt 755 bytes Jun 04, 2026 1:02 PM
multiqc_data/samtools_alignment_plot.txt 184 bytes Jun 04, 2026 1:02 PM
multiqc_data/sift_summary_plot.txt 427 bytes Jun 04, 2026 1:02 PM
multiqc_data/snpeff_effects.txt 1.3 KB Jun 04, 2026 1:02 PM
multiqc_data/snpeff_qualities.txt 5.0 KB Jun 04, 2026 1:02 PM
multiqc_data/snpeff_variant_effects_class.txt 329 bytes Jun 04, 2026 1:02 PM
multiqc_data/snpeff_variant_effects_impact.txt 699 bytes Jun 04, 2026 1:02 PM
multiqc_data/snpeff_variant_effects_region.txt 956 bytes Jun 04, 2026 1:02 PM
multiqc_data/variant_classes_plot.txt 780 bytes Jun 04, 2026 1:02 PM
multiqc_data/variants_by_chromosome_plot.txt 750 bytes Jun 04, 2026 1:02 PM
multiqc_data/vcftools_tstv_by_count.txt 1.0 KB Jun 04, 2026 1:02 PM
multiqc_data/vcftools_tstv_by_qual.txt 13.7 KB Jun 04, 2026 1:02 PM
multiqc_data/vep-general-stats.txt 1.2 KB Jun 04, 2026 1:02 PM
multiqc_data/vep.txt 11.2 KB Jun 04, 2026 1:02 PM
multiqc_plots/pdf/bcftools-stats-subtypes-cnt.pdf 12.8 KB Jun 04, 2026 1:02 PM
multiqc_plots/pdf/bcftools-stats-subtypes-pct.pdf 13.3 KB Jun 04, 2026 1:02 PM
multiqc_plots/pdf/bcftools_stats_indel-lengths-cnt.pdf 10.5 KB Jun 04, 2026 1:02 PM
multiqc_plots/pdf/bcftools_stats_indel-lengths-log.pdf 11.2 KB Jun 04, 2026 1:02 PM
multiqc_plots/pdf/bcftools_stats_variant_depths.pdf 16.4 KB Jun 04, 2026 1:02 PM
multiqc_plots/pdf/bcftools_stats_vqc_Count_Indels.pdf 12.3 KB Jun 04, 2026 1:02 PM
multiqc_plots/pdf/bcftools_stats_vqc_Count_SNP.pdf 12.6 KB Jun 04, 2026 1:02 PM
multiqc_plots/pdf/bcftools_stats_vqc_Count_Transitions.pdf 13.4 KB Jun 04, 2026 1:02 PM
multiqc_plots/pdf/bcftools_stats_vqc_Count_Transversions.pdf 13.3 KB Jun 04, 2026 1:02 PM
multiqc_plots/pdf/consequences_all__plot_Coding_consequences-cnt.pdf 12.9 KB Jun 04, 2026 1:02 PM
multiqc_plots/pdf/consequences_all__plot_Coding_consequences-pct.pdf 13.5 KB Jun 04, 2026 1:02 PM
multiqc_plots/pdf/consequences_all__plot_Consequences_all_-cnt.pdf 16.1 KB Jun 04, 2026 1:02 PM
multiqc_plots/pdf/consequences_all__plot_Consequences_all_-pct.pdf 16.5 KB Jun 04, 2026 1:02 PM
multiqc_plots/pdf/consequences_all__plot_Consequences_most_severe_-cnt.pdf 14.5 KB Jun 04, 2026 1:02 PM
multiqc_plots/pdf/consequences_all__plot_Consequences_most_severe_-pct.pdf 15.2 KB Jun 04, 2026 1:02 PM
multiqc_plots/pdf/mosdepth-coverage-per-contig-single-cnt.pdf 11.2 KB Jun 04, 2026 1:02 PM
multiqc_plots/pdf/mosdepth-coverage-per-contig-single-pct.pdf 11.1 KB Jun 04, 2026 1:02 PM
multiqc_plots/pdf/mosdepth-cumcoverage-dist-id.pdf 13.2 KB Jun 04, 2026 1:02 PM
multiqc_plots/pdf/polyphen_summary_plot-cnt.pdf 13.3 KB Jun 04, 2026 1:02 PM
multiqc_plots/pdf/polyphen_summary_plot-pct.pdf 13.5 KB Jun 04, 2026 1:02 PM
multiqc_plots/pdf/position_in_protein_plot-cnt.pdf 13.3 KB Jun 04, 2026 1:02 PM
multiqc_plots/pdf/position_in_protein_plot-pct.pdf 13.3 KB Jun 04, 2026 1:02 PM
multiqc_plots/pdf/samtools-stats-dp.pdf 25.2 KB Jun 04, 2026 1:02 PM
multiqc_plots/pdf/samtools_alignment_plot-cnt.pdf 12.5 KB Jun 04, 2026 1:02 PM
multiqc_plots/pdf/samtools_alignment_plot-pct.pdf 12.6 KB Jun 04, 2026 1:02 PM
multiqc_plots/pdf/sift_summary_plot-cnt.pdf 13.1 KB Jun 04, 2026 1:02 PM
multiqc_plots/pdf/sift_summary_plot-pct.pdf 13.8 KB Jun 04, 2026 1:02 PM
multiqc_plots/pdf/snpeff_effects-cnt.pdf 15.3 KB Jun 04, 2026 1:02 PM
multiqc_plots/pdf/snpeff_effects-pct.pdf 15.8 KB Jun 04, 2026 1:02 PM
multiqc_plots/pdf/snpeff_qualities.pdf 10.8 KB Jun 04, 2026 1:02 PM
multiqc_plots/pdf/snpeff_variant_effects_class-cnt.pdf 12.7 KB Jun 04, 2026 1:02 PM
multiqc_plots/pdf/snpeff_variant_effects_class-log.pdf 12.6 KB Jun 04, 2026 1:02 PM
multiqc_plots/pdf/snpeff_variant_effects_class-pct-log.pdf 12.9 KB Jun 04, 2026 1:02 PM
multiqc_plots/pdf/snpeff_variant_effects_class-pct.pdf 13.1 KB Jun 04, 2026 1:02 PM
multiqc_plots/pdf/snpeff_variant_effects_impact-cnt.pdf 13.6 KB Jun 04, 2026 1:02 PM
multiqc_plots/pdf/snpeff_variant_effects_impact-log.pdf 13.8 KB Jun 04, 2026 1:02 PM
multiqc_plots/pdf/snpeff_variant_effects_impact-pct-log.pdf 13.7 KB Jun 04, 2026 1:02 PM
multiqc_plots/pdf/snpeff_variant_effects_impact-pct.pdf 13.9 KB Jun 04, 2026 1:02 PM
multiqc_plots/pdf/snpeff_variant_effects_region-cnt.pdf 14.7 KB Jun 04, 2026 1:02 PM
multiqc_plots/pdf/snpeff_variant_effects_region-log.pdf 14.4 KB Jun 04, 2026 1:02 PM
multiqc_plots/pdf/snpeff_variant_effects_region-pct-log.pdf 15.0 KB Jun 04, 2026 1:02 PM
multiqc_plots/pdf/snpeff_variant_effects_region-pct.pdf 14.9 KB Jun 04, 2026 1:02 PM
multiqc_plots/pdf/variant_classes_plot-cnt.pdf 12.5 KB Jun 04, 2026 1:02 PM
multiqc_plots/pdf/variant_classes_plot-pct.pdf 13.1 KB Jun 04, 2026 1:02 PM
multiqc_plots/pdf/variants_by_chromosome_plot-cnt.pdf 12.6 KB Jun 04, 2026 1:02 PM
multiqc_plots/pdf/variants_by_chromosome_plot-pct.pdf 13.1 KB Jun 04, 2026 1:02 PM
multiqc_plots/pdf/vcftools_tstv_by_count.pdf 10.5 KB Jun 04, 2026 1:02 PM
multiqc_plots/pdf/vcftools_tstv_by_qual.pdf 14.8 KB Jun 04, 2026 1:02 PM
multiqc_plots/pdf/vep-general-stats.pdf 19.1 KB Jun 04, 2026 1:02 PM
multiqc_plots/png/bcftools-stats-subtypes-cnt.png 164.0 KB Jun 04, 2026 1:02 PM
multiqc_plots/png/bcftools-stats-subtypes-pct.png 157.1 KB Jun 04, 2026 1:02 PM
multiqc_plots/png/bcftools_stats_indel-lengths-cnt.png 150.5 KB Jun 04, 2026 1:02 PM
multiqc_plots/png/bcftools_stats_indel-lengths-log.png 170.9 KB Jun 04, 2026 1:02 PM
multiqc_plots/png/bcftools_stats_variant_depths.png 185.6 KB Jun 04, 2026 1:02 PM
multiqc_plots/png/bcftools_stats_vqc_Count_Indels.png 111.4 KB Jun 04, 2026 1:02 PM
multiqc_plots/png/bcftools_stats_vqc_Count_SNP.png 107.0 KB Jun 04, 2026 1:02 PM
multiqc_plots/png/bcftools_stats_vqc_Count_Transitions.png 113.9 KB Jun 04, 2026 1:02 PM
multiqc_plots/png/bcftools_stats_vqc_Count_Transversions.png 107.1 KB Jun 04, 2026 1:02 PM
multiqc_plots/png/consequences_all__plot_Coding_consequences-cnt.png 196.2 KB Jun 04, 2026 1:02 PM
multiqc_plots/png/consequences_all__plot_Coding_consequences-pct.png 189.7 KB Jun 04, 2026 1:02 PM
multiqc_plots/png/consequences_all__plot_Consequences_all_-cnt.png 280.9 KB Jun 04, 2026 1:02 PM
multiqc_plots/png/consequences_all__plot_Consequences_all_-pct.png 284.3 KB Jun 04, 2026 1:02 PM
multiqc_plots/png/consequences_all__plot_Consequences_most_severe_-cnt.png 256.8 KB Jun 04, 2026 1:02 PM
multiqc_plots/png/consequences_all__plot_Consequences_most_severe_-pct.png 256.9 KB Jun 04, 2026 1:02 PM
multiqc_plots/png/mosdepth-coverage-per-contig-single-cnt.png 66.8 KB Jun 04, 2026 1:02 PM
multiqc_plots/png/mosdepth-coverage-per-contig-single-pct.png 62.6 KB Jun 04, 2026 1:02 PM
multiqc_plots/png/mosdepth-cumcoverage-dist-id.png 179.5 KB Jun 04, 2026 1:02 PM
multiqc_plots/png/polyphen_summary_plot-cnt.png 99.7 KB Jun 04, 2026 1:02 PM
multiqc_plots/png/polyphen_summary_plot-pct.png 98.4 KB Jun 04, 2026 1:02 PM
multiqc_plots/png/position_in_protein_plot-cnt.png 135.4 KB Jun 04, 2026 1:02 PM
multiqc_plots/png/position_in_protein_plot-pct.png 137.6 KB Jun 04, 2026 1:02 PM
multiqc_plots/png/samtools-stats-dp.png 248.3 KB Jun 04, 2026 1:02 PM
multiqc_plots/png/samtools_alignment_plot-cnt.png 82.5 KB Jun 04, 2026 1:02 PM
multiqc_plots/png/samtools_alignment_plot-pct.png 74.2 KB Jun 04, 2026 1:02 PM
multiqc_plots/png/sift_summary_plot-cnt.png 98.0 KB Jun 04, 2026 1:02 PM
multiqc_plots/png/sift_summary_plot-pct.png 101.5 KB Jun 04, 2026 1:02 PM
multiqc_plots/png/snpeff_effects-cnt.png 185.0 KB Jun 04, 2026 1:02 PM
multiqc_plots/png/snpeff_effects-pct.png 190.2 KB Jun 04, 2026 1:02 PM
multiqc_plots/png/snpeff_qualities.png 190.7 KB Jun 04, 2026 1:02 PM
multiqc_plots/png/snpeff_variant_effects_class-cnt.png 92.3 KB Jun 04, 2026 1:02 PM
multiqc_plots/png/snpeff_variant_effects_class-log.png 93.0 KB Jun 04, 2026 1:02 PM
multiqc_plots/png/snpeff_variant_effects_class-pct-log.png 92.6 KB Jun 04, 2026 1:02 PM
multiqc_plots/png/snpeff_variant_effects_class-pct.png 91.1 KB Jun 04, 2026 1:02 PM
multiqc_plots/png/snpeff_variant_effects_impact-cnt.png 144.8 KB Jun 04, 2026 1:02 PM
multiqc_plots/png/snpeff_variant_effects_impact-log.png 149.9 KB Jun 04, 2026 1:02 PM
multiqc_plots/png/snpeff_variant_effects_impact-pct-log.png 141.3 KB Jun 04, 2026 1:02 PM
multiqc_plots/png/snpeff_variant_effects_impact-pct.png 139.4 KB Jun 04, 2026 1:02 PM
multiqc_plots/png/snpeff_variant_effects_region-cnt.png 160.9 KB Jun 04, 2026 1:02 PM
multiqc_plots/png/snpeff_variant_effects_region-log.png 158.8 KB Jun 04, 2026 1:02 PM
multiqc_plots/png/snpeff_variant_effects_region-pct-log.png 159.6 KB Jun 04, 2026 1:02 PM
multiqc_plots/png/snpeff_variant_effects_region-pct.png 156.9 KB Jun 04, 2026 1:02 PM
multiqc_plots/png/variant_classes_plot-cnt.png 144.4 KB Jun 04, 2026 1:02 PM
multiqc_plots/png/variant_classes_plot-pct.png 144.7 KB Jun 04, 2026 1:02 PM
multiqc_plots/png/variants_by_chromosome_plot-cnt.png 147.1 KB Jun 04, 2026 1:02 PM
multiqc_plots/png/variants_by_chromosome_plot-pct.png 141.3 KB Jun 04, 2026 1:02 PM
multiqc_plots/png/vcftools_tstv_by_count.png 95.9 KB Jun 04, 2026 1:02 PM
multiqc_plots/png/vcftools_tstv_by_qual.png 166.9 KB Jun 04, 2026 1:02 PM
multiqc_plots/png/vep-general-stats.png 137.7 KB Jun 04, 2026 1:02 PM
multiqc_plots/svg/bcftools-stats-subtypes-cnt.svg 44.8 KB Jun 04, 2026 1:02 PM
multiqc_plots/svg/bcftools-stats-subtypes-pct.svg 43.6 KB Jun 04, 2026 1:02 PM
multiqc_plots/svg/bcftools_stats_indel-lengths-cnt.svg 14.8 KB Jun 04, 2026 1:02 PM
multiqc_plots/svg/bcftools_stats_indel-lengths-log.svg 18.6 KB Jun 04, 2026 1:02 PM
multiqc_plots/svg/bcftools_stats_variant_depths.svg 65.4 KB Jun 04, 2026 1:02 PM
multiqc_plots/svg/bcftools_stats_vqc_Count_Indels.svg 17.3 KB Jun 04, 2026 1:02 PM
multiqc_plots/svg/bcftools_stats_vqc_Count_SNP.svg 18.1 KB Jun 04, 2026 1:02 PM
multiqc_plots/svg/bcftools_stats_vqc_Count_Transitions.svg 22.0 KB Jun 04, 2026 1:02 PM
multiqc_plots/svg/bcftools_stats_vqc_Count_Transversions.svg 18.4 KB Jun 04, 2026 1:02 PM
multiqc_plots/svg/consequences_all__plot_Coding_consequences-cnt.svg 27.2 KB Jun 04, 2026 1:02 PM
multiqc_plots/svg/consequences_all__plot_Coding_consequences-pct.svg 27.0 KB Jun 04, 2026 1:02 PM
multiqc_plots/svg/consequences_all__plot_Consequences_all_-cnt.svg 66.5 KB Jun 04, 2026 1:02 PM
multiqc_plots/svg/consequences_all__plot_Consequences_all_-pct.svg 67.5 KB Jun 04, 2026 1:02 PM
multiqc_plots/svg/consequences_all__plot_Consequences_most_severe_-cnt.svg 54.8 KB Jun 04, 2026 1:02 PM
multiqc_plots/svg/consequences_all__plot_Consequences_most_severe_-pct.svg 55.7 KB Jun 04, 2026 1:02 PM
multiqc_plots/svg/mosdepth-coverage-per-contig-single-cnt.svg 9.1 KB Jun 04, 2026 1:02 PM
multiqc_plots/svg/mosdepth-coverage-per-contig-single-pct.svg 8.4 KB Jun 04, 2026 1:02 PM
multiqc_plots/svg/mosdepth-cumcoverage-dist-id.svg 15.2 KB Jun 04, 2026 1:02 PM
multiqc_plots/svg/polyphen_summary_plot-cnt.svg 15.4 KB Jun 04, 2026 1:02 PM
multiqc_plots/svg/polyphen_summary_plot-pct.svg 14.7 KB Jun 04, 2026 1:02 PM
multiqc_plots/svg/position_in_protein_plot-cnt.svg 28.4 KB Jun 04, 2026 1:02 PM
multiqc_plots/svg/position_in_protein_plot-pct.svg 28.2 KB Jun 04, 2026 1:02 PM
multiqc_plots/svg/samtools-stats-dp.svg 159.6 KB Jun 04, 2026 1:02 PM
multiqc_plots/svg/samtools_alignment_plot-cnt.svg 15.1 KB Jun 04, 2026 1:02 PM
multiqc_plots/svg/samtools_alignment_plot-pct.svg 12.8 KB Jun 04, 2026 1:02 PM
multiqc_plots/svg/sift_summary_plot-cnt.svg 13.3 KB Jun 04, 2026 1:02 PM
multiqc_plots/svg/sift_summary_plot-pct.svg 14.8 KB Jun 04, 2026 1:02 PM
multiqc_plots/svg/snpeff_effects-cnt.svg 39.2 KB Jun 04, 2026 1:02 PM
multiqc_plots/svg/snpeff_effects-pct.svg 40.7 KB Jun 04, 2026 1:02 PM
multiqc_plots/svg/snpeff_qualities.svg 12.3 KB Jun 04, 2026 1:02 PM
multiqc_plots/svg/snpeff_variant_effects_class-cnt.svg 13.3 KB Jun 04, 2026 1:02 PM
multiqc_plots/svg/snpeff_variant_effects_class-log.svg 14.4 KB Jun 04, 2026 1:02 PM
multiqc_plots/svg/snpeff_variant_effects_class-pct-log.svg 14.2 KB Jun 04, 2026 1:02 PM
multiqc_plots/svg/snpeff_variant_effects_class-pct.svg 13.1 KB Jun 04, 2026 1:02 PM
multiqc_plots/svg/snpeff_variant_effects_impact-cnt.svg 20.6 KB Jun 04, 2026 1:02 PM
multiqc_plots/svg/snpeff_variant_effects_impact-log.svg 28.6 KB Jun 04, 2026 1:02 PM
multiqc_plots/svg/snpeff_variant_effects_impact-pct-log.svg 21.1 KB Jun 04, 2026 1:02 PM
multiqc_plots/svg/snpeff_variant_effects_impact-pct.svg 19.9 KB Jun 04, 2026 1:02 PM
multiqc_plots/svg/snpeff_variant_effects_region-cnt.svg 32.2 KB Jun 04, 2026 1:02 PM
multiqc_plots/svg/snpeff_variant_effects_region-log.svg 33.4 KB Jun 04, 2026 1:02 PM
multiqc_plots/svg/snpeff_variant_effects_region-pct-log.svg 33.2 KB Jun 04, 2026 1:02 PM
multiqc_plots/svg/snpeff_variant_effects_region-pct.svg 31.5 KB Jun 04, 2026 1:02 PM
multiqc_plots/svg/variant_classes_plot-cnt.svg 18.7 KB Jun 04, 2026 1:02 PM
multiqc_plots/svg/variant_classes_plot-pct.svg 19.6 KB Jun 04, 2026 1:02 PM
multiqc_plots/svg/variants_by_chromosome_plot-cnt.svg 20.7 KB Jun 04, 2026 1:02 PM
multiqc_plots/svg/variants_by_chromosome_plot-pct.svg 19.5 KB Jun 04, 2026 1:02 PM
multiqc_plots/svg/vcftools_tstv_by_count.svg 15.5 KB Jun 04, 2026 1:02 PM
multiqc_plots/svg/vcftools_tstv_by_qual.svg 19.2 KB Jun 04, 2026 1:02 PM
multiqc_plots/svg/vep-general-stats.svg 92.6 KB Jun 04, 2026 1:02 PM
multiqc_report.html 2.5 MB Jun 04, 2026 1:02 PM
versions.yml 48 bytes Jun 04, 2026 1:02 PM