File Info
- Filename
- multiqc_data/multiqc_data.json
- Full Path
- s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/eea7cffad6ad43857ee9a84a319300/multiqc_data/multiqc_data.json
- Size
- 2.2 MB
- Attempt
Content
View in new tab{
"report_multiqc_command": "/opt/conda/bin/multiqc --force --config multiqc_config.yml .",
"report_data_sources": {
"Samtools Flagstat": {
"stats": {
"HCC1395_BL": "/tmp/nxf.waPUHPNmJI/5/HCC1395_BL.stats",
"HCC1395_tumor": "/tmp/nxf.waPUHPNmJI/6/HCC1395_tumor.stats",
"Sig_18_Blood": "/tmp/nxf.waPUHPNmJI/4/Sig_18_Blood.stats",
"Sig_18_tissue": "/tmp/nxf.waPUHPNmJI/3/Sig_18_tissue.stats"
}
},
"Mosdepth": {
"genome_results": {
"HCC1395_BL": "/tmp/nxf.waPUHPNmJI/11/HCC1395_BL.mosdepth.region.dist.txt",
"HCC1395_tumor": "/tmp/nxf.waPUHPNmJI/13/HCC1395_tumor.mosdepth.region.dist.txt",
"Sig_18_Blood": "/tmp/nxf.waPUHPNmJI/9/Sig_18_Blood.mosdepth.region.dist.txt",
"Sig_18_tissue": "/tmp/nxf.waPUHPNmJI/7/Sig_18_tissue.mosdepth.region.dist.txt"
}
},
"Bcftools": {
"stats": {
"HCC1395_BL": "/tmp/nxf.waPUHPNmJI/42/HCC1395_BL.bcftools_stats.txt",
"HCC1395_BL.deconflicted_germline": "/tmp/nxf.waPUHPNmJI/48/HCC1395_BL.deconflicted_germline.bcftools_stats.txt",
"HCC1395_tumor_vs_HCC1395_BL.manta.diploid_sv": "/tmp/nxf.waPUHPNmJI/40/HCC1395_tumor_vs_HCC1395_BL.manta.diploid_sv.bcftools_stats.txt",
"HCC1395_tumor_vs_HCC1395_BL.manta.somatic_sv": "/tmp/nxf.waPUHPNmJI/39/HCC1395_tumor_vs_HCC1395_BL.manta.somatic_sv.bcftools_stats.txt",
"HCC1395_tumor_vs_HCC1395_BL.strelka.somatic_indels": "/tmp/nxf.waPUHPNmJI/43/HCC1395_tumor_vs_HCC1395_BL.strelka.somatic_indels.bcftools_stats.txt",
"HCC1395_tumor_vs_HCC1395_BL.strelka.somatic_snvs": "/tmp/nxf.waPUHPNmJI/44/HCC1395_tumor_vs_HCC1395_BL.strelka.somatic_snvs.bcftools_stats.txt",
"Sig_18_Blood": "/tmp/nxf.waPUHPNmJI/41/Sig_18_Blood.bcftools_stats.txt",
"Sig_18_Blood.deconflicted_germline": "/tmp/nxf.waPUHPNmJI/47/Sig_18_Blood.deconflicted_germline.bcftools_stats.txt",
"custom_Sig_18_tumor_normal.manta.diploid_sv": "/tmp/nxf.waPUHPNmJI/38/custom_Sig_18_tumor_normal.manta.diploid_sv.bcftools_stats.txt",
"custom_Sig_18_tumor_normal.manta.somatic_sv": "/tmp/nxf.waPUHPNmJI/37/custom_Sig_18_tumor_normal.manta.somatic_sv.bcftools_stats.txt",
"custom_Sig_18_tumor_normal.strelka.somatic_indels": "/tmp/nxf.waPUHPNmJI/45/custom_Sig_18_tumor_normal.strelka.somatic_indels.bcftools_stats.txt",
"custom_Sig_18_tumor_normal.strelka.somatic_snvs": "/tmp/nxf.waPUHPNmJI/46/custom_Sig_18_tumor_normal.strelka.somatic_snvs.bcftools_stats.txt"
}
},
"Vcftools": {
"all_sections": {
"TsTv by counts": "/tmp/nxf.waPUHPNmJI/58/custom_Sig_18_tumor_normal.strelka.somatic_snvs.TsTv.count",
"TsTv by quality": "/tmp/nxf.waPUHPNmJI/82/custom_Sig_18_tumor_normal.strelka.somatic_snvs.TsTv.qual"
}
},
"SNPeff": {
"all_sections": {
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"HCC1395_BL_custom.ann_snpEff": "/tmp/nxf.waPUHPNmJI/22/HCC1395_BL_custom.ann_snpEff.csv",
"HCC1395_tumor_vs_HCC1395_BL.manta.diploid_sv_custom.ann_snpEff": "/tmp/nxf.waPUHPNmJI/19/HCC1395_tumor_vs_HCC1395_BL.manta.diploid_sv_custom.ann_snpEff.csv",
"HCC1395_tumor_vs_HCC1395_BL.manta.somatic_sv_custom.ann_snpEff": "/tmp/nxf.waPUHPNmJI/20/HCC1395_tumor_vs_HCC1395_BL.manta.somatic_sv_custom.ann_snpEff.csv",
"HCC1395_tumor_vs_HCC1395_BL.strelka.somatic_indels_custom.ann_snpEff": "/tmp/nxf.waPUHPNmJI/30/HCC1395_tumor_vs_HCC1395_BL.strelka.somatic_indels_custom.ann_snpEff.csv",
"HCC1395_tumor_vs_HCC1395_BL.strelka.somatic_snvs_custom.ann_snpEff": "/tmp/nxf.waPUHPNmJI/29/HCC1395_tumor_vs_HCC1395_BL.strelka.somatic_snvs_custom.ann_snpEff.csv",
"Sig_18_Blood.deconflicted_germline_custom.ann_snpEff": "/tmp/nxf.waPUHPNmJI/87/Sig_18_Blood.deconflicted_germline_custom.ann_snpEff.csv",
"Sig_18_Blood_custom.ann_snpEff": "/tmp/nxf.waPUHPNmJI/21/Sig_18_Blood_custom.ann_snpEff.csv",
"custom_Sig_18_tumor_normal.manta.diploid_sv_custom.ann_snpEff": "/tmp/nxf.waPUHPNmJI/18/custom_Sig_18_tumor_normal.manta.diploid_sv_custom.ann_snpEff.csv",
"custom_Sig_18_tumor_normal.manta.somatic_sv_custom.ann_snpEff": "/tmp/nxf.waPUHPNmJI/17/custom_Sig_18_tumor_normal.manta.somatic_sv_custom.ann_snpEff.csv",
"custom_Sig_18_tumor_normal.strelka.somatic_indels_custom.ann_snpEff": "/tmp/nxf.waPUHPNmJI/33/custom_Sig_18_tumor_normal.strelka.somatic_indels_custom.ann_snpEff.csv",
"custom_Sig_18_tumor_normal.strelka.somatic_snvs_custom.ann_snpEff": "/tmp/nxf.waPUHPNmJI/34/custom_Sig_18_tumor_normal.strelka.somatic_snvs_custom.ann_snpEff.csv"
}
},
"VEP": {
"all_sections": {
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"HCC1395_BL_custom.ann_snpEff_VEP.ann": "/tmp/nxf.waPUHPNmJI/28/HCC1395_BL_custom.ann_snpEff_VEP.ann.summary.html",
"HCC1395_tumor_vs_HCC1395_BL.manta.diploid_sv_custom.ann_snpEff_VEP.ann": "/tmp/nxf.waPUHPNmJI/25/HCC1395_tumor_vs_HCC1395_BL.manta.diploid_sv_custom.ann_snpEff_VEP.ann.summary.html",
"HCC1395_tumor_vs_HCC1395_BL.manta.somatic_sv_custom.ann_snpEff_VEP.ann": "/tmp/nxf.waPUHPNmJI/26/HCC1395_tumor_vs_HCC1395_BL.manta.somatic_sv_custom.ann_snpEff_VEP.ann.summary.html",
"HCC1395_tumor_vs_HCC1395_BL.strelka.somatic_indels_custom.ann_snpEff_VEP.ann": "/tmp/nxf.waPUHPNmJI/32/HCC1395_tumor_vs_HCC1395_BL.strelka.somatic_indels_custom.ann_snpEff_VEP.ann.summary.html",
"HCC1395_tumor_vs_HCC1395_BL.strelka.somatic_snvs_custom.ann_snpEff_VEP.ann": "/tmp/nxf.waPUHPNmJI/31/HCC1395_tumor_vs_HCC1395_BL.strelka.somatic_snvs_custom.ann_snpEff_VEP.ann.summary.html",
"Sig_18_Blood.deconflicted_germline_custom.ann_snpEff_VEP.ann": "/tmp/nxf.waPUHPNmJI/89/Sig_18_Blood.deconflicted_germline_custom.ann_snpEff_VEP.ann.summary.html",
"Sig_18_Blood_custom.ann_snpEff_VEP.ann": "/tmp/nxf.waPUHPNmJI/27/Sig_18_Blood_custom.ann_snpEff_VEP.ann.summary.html",
"custom_Sig_18_tumor_normal.manta.diploid_sv_custom.ann_snpEff_VEP.ann": "/tmp/nxf.waPUHPNmJI/24/custom_Sig_18_tumor_normal.manta.diploid_sv_custom.ann_snpEff_VEP.ann.summary.html",
"custom_Sig_18_tumor_normal.manta.somatic_sv_custom.ann_snpEff_VEP.ann": "/tmp/nxf.waPUHPNmJI/23/custom_Sig_18_tumor_normal.manta.somatic_sv_custom.ann_snpEff_VEP.ann.summary.html",
"custom_Sig_18_tumor_normal.strelka.somatic_indels_custom.ann_snpEff_VEP.ann": "/tmp/nxf.waPUHPNmJI/35/custom_Sig_18_tumor_normal.strelka.somatic_indels_custom.ann_snpEff_VEP.ann.summary.html",
"custom_Sig_18_tumor_normal.strelka.somatic_snvs_custom.ann_snpEff_VEP.ann": "/tmp/nxf.waPUHPNmJI/36/custom_Sig_18_tumor_normal.strelka.somatic_snvs_custom.ann_snpEff_VEP.ann.summary.html"
}
}
},
"report_general_stats_data": {
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