{
  "metadata": {
    "version": "2.0",
    "mode": "variant"
  },
  "pairs": {
    "HCC1395_tumor_vs_HCC1395_BL": {
      "tumor_sample": "HCC1395_tumor",
      "normal_sample": "HCC1395_BL",
      "callers": {
        "strelka": {
          "num_indels": 35,
          "num_snps": 369
        }
      },
      "contamination": {
        "normal_contamination_pct": 0.007,
        "tumor_contamination_pct": 0.262
      },
      "sample_identity": {
        "tumor_normal_correlation": 0.98,
        "matched": true
      },
      "tmb": {
        "filtered_variant_count": 4.0,
        "non_synonymous_count": 1.0,
        "effective_coding_region_size": 0.34
      }
    },
    "Sig_18_tissue_vs_Sig_18_Blood": {
      "tumor_sample": "",
      "normal_sample": "",
      "contamination": {
        "normal_contamination_pct": 0.026,
        "tumor_contamination_pct": 0.055
      }
    },
    "custom_Sig_18_tumor_normal": {
      "tumor_sample": "Sig_18_tissue",
      "normal_sample": "Sig_18_Blood",
      "callers": {
        "strelka": {
          "num_indels": 66,
          "num_snps": 265
        }
      },
      "sample_identity": {
        "tumor_normal_correlation": 0.9901,
        "matched": true
      },
      "tmb": {
        "filtered_variant_count": 5.0,
        "non_synonymous_count": 2.0,
        "effective_coding_region_size": 0.34
      }
    }
  },
  "samples": {
    "Sig_18_Blood": {
      "callers": {
        "germline_cnv": {
          "cnv_call_status": "PASS",
          "low_coverage_sample_or_batch": false,
          "list_of_abnormal_ploidy_chr": null,
          "num_del": 1,
          "num_dup": 0,
          "num_lowconf_del": 0,
          "num_lowconf_dup": 0,
          "num_del_abnormal_ploidy_chr": 0,
          "num_dup_abnormal_ploidy_chr": 0,
          "num_lowconf_del_abnormal_ploidy_chr": 0,
          "num_lowconf_dup_abnormal_ploidy_chr": 0
        },
        "deconflict": {
          "chip_germ_chip_wins": 0,
          "chip_germ_germ_wins": 0,
          "chip_germ_suppress_both": 0,
          "chip_somatic_suspect": 0,
          "germ_som_germ_wins": 0,
          "germ_som_suppress_both": 0,
          "total_chip_germ_conflicts": 0,
          "total_germ_som_conflicts": 0
        }
      }
    },
    "HCC1395_BL": {
      "callers": {
        "germline_cnv": {
          "cnv_call_status": "PASS",
          "low_coverage_sample_or_batch": false,
          "list_of_abnormal_ploidy_chr": null,
          "num_del": 1,
          "num_dup": 0,
          "num_lowconf_del": 0,
          "num_lowconf_dup": 0,
          "num_del_abnormal_ploidy_chr": 0,
          "num_dup_abnormal_ploidy_chr": 0,
          "num_lowconf_del_abnormal_ploidy_chr": 0,
          "num_lowconf_dup_abnormal_ploidy_chr": 0
        },
        "deconflict": {
          "chip_germ_chip_wins": 0,
          "chip_germ_germ_wins": 0,
          "chip_germ_suppress_both": 0,
          "chip_somatic_suspect": 0,
          "germ_som_germ_wins": 0,
          "germ_som_suppress_both": 0,
          "total_chip_germ_conflicts": 0,
          "total_germ_som_conflicts": 0
        }
      }
    }
  }
}