succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:WHATSHAP_TNSEQ (custom_Sig_18_tumor_normal:chr21) 1m 20s 2s 1m 10s 8s 433.7 MB 100% 637.6 MB 602.0 KB 0 bytes 608.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:WHATSHAP_TNSEQ (HCC1395_tumor_vs_HCC1395_BL:chr21) 40s 7s 24s 9s 159.7 MB 100% 366.5 MB 430.3 KB 0 bytes 440.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_CONTAMINATION_ANALYSIS:CONPAIR_CONTAMINATION (HCC1395_tumor_vs_HCC1395_BL) 8s 1s 5s 1s 85.5 MB 200% 26.8 MB 710 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_CONTAMINATION_ANALYSIS:CONPAIR_CONTAMINATION (Sig_18_tissue_vs_Sig_18_Blood) 17s 1s 14s 1s 86.6 MB 136% 29.3 MB 711 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_CONTAMINATION_ANALYSIS:CONPAIR_PILEUP (HCC1395_BL) 43s 29s 4s 9s 539.5 MB 244% 142.1 MB 1.3 MB 0 bytes 1.3 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_CONTAMINATION_ANALYSIS:CONPAIR_PILEUP (HCC1395_tumor) 45s 30s 6s 8s 650.0 MB 229% 189.4 MB 2.1 MB 0 bytes 2.1 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_CONTAMINATION_ANALYSIS:CONPAIR_PILEUP (Sig_18_Blood) 46s 31s 5s 9s 442.0 MB 245% 149.6 MB 1.5 MB 0 bytes 1.5 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_CONTAMINATION_ANALYSIS:CONPAIR_PILEUP (Sig_18_tissue) 44s 27s 7s 9s 622.6 MB 191% 259.2 MB 4.4 MB 4.0 KB 4.4 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP (HCC1395_BL;SNP_GRCh38_hg38_wChr) 22s 3s 10s 9s 152.9 MB 391% 3.2 GB 809.6 KB 0 bytes 212.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP (HCC1395_tumor;SNP_GRCh38_hg38_wChr) 27s 3s 11s 13s 152.7 MB 337% 3.3 GB 817.7 KB 0 bytes 212.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP (Sig_18_Blood;SNP_GRCh38_hg38_wChr) 24s 2s 10s 12s 153.4 MB 463% 3.2 GB 810.0 KB 0 bytes 208.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP (Sig_18_tissue;SNP_GRCh38_hg38_wChr) 29s 3s 13s 13s 153.4 MB 285% 3.6 GB 818.0 KB 0 bytes 212.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_NGSCHECKMATE:NGSCHECKMATE_NCM (1) 22s 12s 1s 9s 3.3 MB 2184% 12.0 MB 829.6 KB 0 bytes 868.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:MOSDEPTH (HCC1395_BL) 28s 16s 2s 10s 381.0 MB 175% 107.0 MB 3.4 MB 0 bytes 3.5 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:MOSDEPTH (HCC1395_tumor) 28s 16s 2s 10s 399.6 MB 237% 262.4 MB 4.9 MB 0 bytes 4.9 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:MOSDEPTH (Sig_18_Blood) 28s 17s 2s 9s 370.2 MB 187% 132.7 MB 4.0 MB 0 bytes 4.0 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:MOSDEPTH (Sig_18_tissue) 32s 17s 5s 10s 268.9 MB 221% 533.3 MB 6.3 MB 4.0 KB 6.3 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:SAMTOOLS_STATS (HCC1395_BL) 18s 5s 2s 11s 9.2 MB 131% 106.7 MB 126.4 KB 0 bytes 128.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:SAMTOOLS_STATS (HCC1395_tumor) 20s 5s 5s 10s 9.4 MB 133% 262.1 MB 130.6 KB 0 bytes 132.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:SAMTOOLS_STATS (Sig_18_Blood) 20s 6s 3s 11s 9.4 MB 131% 132.4 MB 130.1 KB 0 bytes 132.0 KB 1
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