.command.err - Workdir - NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:MIMSI_ANALYZE (custom_Sig_18_tumor_normal)

File Info

Filename: .command.err
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/bc292858b4313ab8167337e94b447b/.command.err
Size: 3.2 KB
Task: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:MIMSI_ANALYZE (custom_Sig_18_tumor_normal)
Attempt

Content

[W::hts_idx_load3] The index file is older than the data file: Sig_18_tissue.recal.bam.bai
[W::hts_idx_load3] The index file is older than the data file: Sig_18_tissue.recal.bam.bai
[W::hts_idx_load3] The index file is older than the data file: Sig_18_tissue.recal.bam.bai
[W::hts_idx_load3] The index file is older than the data file: Sig_18_tissue.recal.bam.bai
[W::hts_idx_load3] The index file is older than the data file: Sig_18_tissue.recal.bam.bai
[W::hts_idx_load3] The index file is older than the data file: Sig_18_tissue.recal.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: Sig_18_tissue.recal.bam.bai
The index file is older than the data file: Sig_18_tissue.recal.bam.bai
[W::hts_idx_load3] The index file is older than the data file: Sig_18_tissue.recal.bam.bai
[W::hts_idx_load3] The index file is older than the data file: Sig_18_tissue.recal.bam.bai
[W::hts_idx_load3] The index file is older than the data file: Sig_18_tissue.recal.bam.bai
[W::hts_idx_load3] The index file is older than the data file: Sig_18_tissue.recal.bam.bai
[W::hts_idx_load3] The index file is older than the data file: Sig_18_tissue.recal.bam.bai
[W::hts_idx_load3] The index file is older than the data file: Sig_18_tissue.recal.bam.bai
[W::hts_idx_load3] The index file is older than the data file: Sig_18_tissue.recal.bam.bai
[W::hts_idx_load3] The index file is older than the data file: Sig_18_tissue.recal.bam.bai
[W::hts_idx_load3] The index file is older than the data file: normal/Sig_18_Blood.recal.bam.bai
[W::hts_idx_load3] The index file is older than the data file: normal/Sig_18_Blood.recal.bam.bai
[W::hts_idx_load3] The index file is older than the data file: normal/Sig_18_Blood.recal.bam.bai
[W::hts_idx_load3] The index file is older than the data file: normal/Sig_18_Blood.recal.bam.bai
[W::hts_idx_load3] The index file is older than the data file: normal/Sig_18_Blood.recal.bam.bai
[W::hts_idx_load3] The index file is older than the data file: normal/Sig_18_Blood.recal.bam.bai
[W::hts_idx_load3] The index file is older than the data file: normal/Sig_18_Blood.recal.bam.bai
[W::hts_idx_load3] The index file is older than the data file: normal/Sig_18_Blood.recal.bam.bai
[W::hts_idx_load3] The index file is older than the data file: normal/Sig_18_Blood.recal.bam.bai
[W::hts_idx_load3] The index file is older than the data file: normal/Sig_18_Blood.recal.bam.bai
[W::hts_idx_load3] The index file is older than the data file: normal/Sig_18_Blood.recal.bam.bai
[W::hts_idx_load3] The index file is older than the data file: normal/Sig_18_Blood.recal.bam.bai
[W::hts_idx_load3] The index file is older than the data file: normal/Sig_18_Blood.recal.bam.bai
[W::hts_idx_load3] The index file is older than the data file: normal/Sig_18_Blood.recal.bam.bai
[W::hts_idx_load3] The index file is older than the data file: normal/Sig_18_Blood.recal.bam.bai
[W::hts_idx_load3] The index file is older than the data file: normal/Sig_18_Blood.recal.bam.bai
/usr/local/lib/python3.11/site-packages/main/evaluate_sample.py:47: UserWarning: Sample name 'custom_Sig_18_tumor_normal' has multiple '_' characters; cannot split into tumor/normal IDs. Reporting full name as tumor ID.
  warnings.warn(