[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXrK2hnh/xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_chr21.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXrK2hnh/xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_chr21.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXrK2hnh/xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_chr21.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXrK2hnh/xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_chr21.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXrK2hnh/xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_chr21.bed.gz.tbi
[2026-06-04T19:31:48.518692Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T19:31:48.519583Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [WorkflowRunner] pyFlowClientWorkflowClass: MantaWorkflow
[2026-06-04T19:31:48.519594Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T19:31:48.519599Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T19:31:48.519604Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXrK2hnh'
[2026-06-04T19:31:48.519609Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/manta/runWorkflow.py -m local -j 14'
[2026-06-04T19:31:48.519614Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T19:31:48.519621Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [WorkflowRunner] [RunParameters] nCores: 14
[2026-06-04T19:31:48.519625Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-04T19:31:48.519629Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/manta/workspace/pyflow.data
[2026-06-04T19:31:48.519633Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T19:31:48.519638Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T19:31:48.519643Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T19:31:48.519648Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T19:31:48.519993Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T19:31:48.520096Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [MantaWorkflow] Initiating Manta workflow version: 1.6.0
[2026-06-04T19:31:48.520299Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [WorkflowRunner] Adding command task 'getAlignmentStats_makeTmpDir' to master workflow
[2026-06-04T19:31:48.520950Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [WorkflowRunner] Adding command task 'getAlignmentStats_generateStats_000' to master workflow
[2026-06-04T19:31:48.521150Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Launching command task: 'getAlignmentStats_makeTmpDir' from master workflow
[2026-06-04T19:31:48.521274Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [WorkflowRunner] Adding command task 'getAlignmentStats_generateStats_001' to master workflow
[2026-06-04T19:31:48.521635Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [WorkflowRunner] Adding command task 'getAlignmentStats_mergeStats' to master workflow
[2026-06-04T19:31:48.522104Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [WorkflowRunner] Adding command task 'getAlignmentStats_removeTmpDir' to master workflow
[2026-06-04T19:31:48.524377Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [WorkflowRunner] Adding command task 'summarizeStats' to master workflow
[2026-06-04T19:31:48.524732Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskRunner:getAlignmentStats_makeTmpDir] Task initiated on local node
[2026-06-04T19:31:48.524929Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [WorkflowRunner] Adding command task 'makeGraphTmpDir' to master workflow
[2026-06-04T19:31:48.589685Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Completed command task: 'getAlignmentStats_makeTmpDir' launched from master workflow
[2026-06-04T19:31:48.590170Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Launching command task: 'getAlignmentStats_generateStats_001' from master workflow
[2026-06-04T19:31:48.590572Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Launching command task: 'getAlignmentStats_generateStats_000' from master workflow
[2026-06-04T19:31:48.593695Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskRunner:getAlignmentStats_generateStats_001] Task initiated on local node
[2026-06-04T19:31:48.817149Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [WorkflowRunner] Adding command task 'makeLocusGraph_chromId_020_chr21-5117103-5117231_0000_to_chromId_020_chr21-39269899-39270033_0000' to master workflow
[2026-06-04T19:31:49.157999Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [WorkflowRunner] Adding command task 'makeLocusGraph_chromId_020_chr21-39270283-39270433_0000_to_chromId_020_chr21-46664295-46664374_0000' to master workflow
[2026-06-04T19:31:49.158370Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [WorkflowRunner] Adding sub-workflow task 'mergeLocusGraphInputList' to master workflow
[2026-06-04T19:31:49.158510Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [WorkflowRunner] Adding command task 'mergeLocusGraph' to master workflow
[2026-06-04T19:31:49.158618Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [WorkflowRunner] Adding command task 'checkLocusGraph' to master workflow
[2026-06-04T19:31:49.158722Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [WorkflowRunner] Adding command task 'removeTmpDir' to master workflow
[2026-06-04T19:31:49.158820Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [WorkflowRunner] Adding command task 'locusGraphStats' to master workflow
[2026-06-04T19:31:49.159391Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [WorkflowRunner] Adding command task 'makeHyGenDir' to master workflow
[2026-06-04T19:31:49.159591Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [WorkflowRunner] Adding command task 'generateCandidateSV_0000' to master workflow
[2026-06-04T19:31:49.159721Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [WorkflowRunner] Adding command task 'fixVcfHeader_sortCandidateSV' to master workflow
[2026-06-04T19:31:49.159880Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [WorkflowRunner] Adding sub-workflow task 'sortCandidateSVInputList' to master workflow
[2026-06-04T19:31:49.159982Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [WorkflowRunner] Adding command task 'sort_sortCandidateSV' to master workflow
[2026-06-04T19:31:49.160076Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [WorkflowRunner] Adding command task 'tabix_sortCandidateSV' to master workflow
[2026-06-04T19:31:49.160170Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [WorkflowRunner] Adding command task 'fixVcfHeader_sortDiploidSV' to master workflow
[2026-06-04T19:31:49.160309Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [WorkflowRunner] Adding sub-workflow task 'sortDiploidSVInputList' to master workflow
[2026-06-04T19:31:49.160409Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [WorkflowRunner] Adding command task 'sort_sortDiploidSV' to master workflow
[2026-06-04T19:31:49.160498Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [WorkflowRunner] Adding command task 'tabix_sortDiploidSV' to master workflow
[2026-06-04T19:31:49.160588Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [WorkflowRunner] Adding command task 'fixVcfHeader_sortSomaticSV' to master workflow
[2026-06-04T19:31:49.160723Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [WorkflowRunner] Adding sub-workflow task 'sortSomaticSVInputList' to master workflow
[2026-06-04T19:31:49.160811Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [WorkflowRunner] Adding command task 'sort_sortSomaticSV' to master workflow
[2026-06-04T19:31:49.160898Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [WorkflowRunner] Adding command task 'tabix_sortSomaticSV' to master workflow
[2026-06-04T19:31:49.161005Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [WorkflowRunner] Adding command task 'extractSmallIndels' to master workflow
[2026-06-04T19:31:49.161092Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [WorkflowRunner] Adding command task 'extractSmallIndels_tabix' to master workflow
[2026-06-04T19:31:49.161227Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [WorkflowRunner] Adding sub-workflow task 'sortEdgeRuntimeLogsInputList' to master workflow
[2026-06-04T19:31:49.161322Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [WorkflowRunner] Adding command task 'sortEdgeRuntimeLogs' to master workflow
[2026-06-04T19:31:49.161378Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T19:32:01.086588Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskRunner:getAlignmentStats_generateStats_000] Task initiated on local node
[2026-06-04T19:32:01.088351Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Completed command task: 'getAlignmentStats_generateStats_001' launched from master workflow
[2026-06-04T19:32:01.088726Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Completed command task: 'getAlignmentStats_generateStats_000' launched from master workflow
[2026-06-04T19:32:01.089092Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Launching command task: 'getAlignmentStats_mergeStats' from master workflow
[2026-06-04T19:32:01.091509Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskRunner:getAlignmentStats_mergeStats] Task initiated on local node
[2026-06-04T19:32:01.120807Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Completed command task: 'getAlignmentStats_mergeStats' launched from master workflow
[2026-06-04T19:32:01.121219Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Launching command task: 'getAlignmentStats_removeTmpDir' from master workflow
[2026-06-04T19:32:01.121471Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Launching command task: 'makeGraphTmpDir' from master workflow
[2026-06-04T19:32:01.121791Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Launching command task: 'summarizeStats' from master workflow
[2026-06-04T19:32:01.125285Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskRunner:summarizeStats] Task initiated on local node
[2026-06-04T19:32:01.125506Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskRunner:getAlignmentStats_removeTmpDir] Task initiated on local node
[2026-06-04T19:32:01.126075Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskRunner:makeGraphTmpDir] Task initiated on local node
[2026-06-04T19:32:01.154551Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Completed command task: 'getAlignmentStats_removeTmpDir' launched from master workflow
[2026-06-04T19:32:01.154602Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Completed command task: 'makeGraphTmpDir' launched from master workflow
[2026-06-04T19:32:01.154625Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Completed command task: 'summarizeStats' launched from master workflow
[2026-06-04T19:32:01.154962Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Launching command task: 'makeLocusGraph_chromId_020_chr21-39270283-39270433_0000_to_chromId_020_chr21-46664295-46664374_0000' from master workflow
[2026-06-04T19:32:01.155207Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Launching command task: 'makeLocusGraph_chromId_020_chr21-5117103-5117231_0000_to_chromId_020_chr21-39269899-39270033_0000' from master workflow
[2026-06-04T19:32:01.171577Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskRunner:makeLocusGraph_chromId_020_chr21-39270283-39270433_0000_to_chromId_020_chr21-46664295-46664374_0000] Task initiated on local node
[2026-06-04T19:32:01.172419Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskRunner:makeLocusGraph_chromId_020_chr21-5117103-5117231_0000_to_chromId_020_chr21-39269899-39270033_0000] Task initiated on local node
[2026-06-04T19:32:18.924921Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Completed command task: 'makeLocusGraph_chromId_020_chr21-5117103-5117231_0000_to_chromId_020_chr21-39269899-39270033_0000' launched from master workflow
[2026-06-04T19:32:30.191702Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Completed command task: 'makeLocusGraph_chromId_020_chr21-39270283-39270433_0000_to_chromId_020_chr21-46664295-46664374_0000' launched from master workflow
[2026-06-04T19:32:30.192427Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Launching sub-workflow task: 'mergeLocusGraphInputList' from master workflow
[2026-06-04T19:32:30.192596Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskRunner:mergeLocusGraphInputList] Starting task specification for sub-workflow
[2026-06-04T19:32:30.192765Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskRunner:mergeLocusGraphInputList] Finished task specification for sub-workflow
[2026-06-04T19:32:30.193816Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Completed sub-workflow task: 'mergeLocusGraphInputList' launched from master workflow
[2026-06-04T19:32:30.194155Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Launching command task: 'mergeLocusGraph' from master workflow
[2026-06-04T19:32:30.196322Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskRunner:mergeLocusGraph] Task initiated on local node
[2026-06-04T19:32:30.258189Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Completed command task: 'mergeLocusGraph' launched from master workflow
[2026-06-04T19:32:30.258532Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Launching command task: 'locusGraphStats' from master workflow
[2026-06-04T19:32:30.258722Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Launching command task: 'checkLocusGraph' from master workflow
[2026-06-04T19:32:30.259186Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Launching command task: 'removeTmpDir' from master workflow
[2026-06-04T19:32:30.261519Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskRunner:checkLocusGraph] Task initiated on local node
[2026-06-04T19:32:30.263288Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskRunner:removeTmpDir] Task initiated on local node
[2026-06-04T19:32:30.289342Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskRunner:locusGraphStats] Task initiated on local node
[2026-06-04T19:32:30.291554Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Completed command task: 'checkLocusGraph' launched from master workflow
[2026-06-04T19:32:30.291606Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Completed command task: 'removeTmpDir' launched from master workflow
[2026-06-04T19:32:30.292043Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Launching command task: 'makeHyGenDir' from master workflow
[2026-06-04T19:32:30.292411Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Completed command task: 'locusGraphStats' launched from master workflow
[2026-06-04T19:32:30.295234Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskRunner:makeHyGenDir] Task initiated on local node
[2026-06-04T19:32:30.324456Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Completed command task: 'makeHyGenDir' launched from master workflow
[2026-06-04T19:32:30.324853Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Launching command task: 'generateCandidateSV_0000' from master workflow
[2026-06-04T19:32:30.327288Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskRunner:generateCandidateSV_0000] Task initiated on local node
[2026-06-04T19:32:36.040519Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Completed command task: 'generateCandidateSV_0000' launched from master workflow
[2026-06-04T19:32:36.040981Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Launching sub-workflow task: 'sortEdgeRuntimeLogsInputList' from master workflow
[2026-06-04T19:32:36.041238Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskRunner:sortEdgeRuntimeLogsInputList] Starting task specification for sub-workflow
[2026-06-04T19:32:36.041511Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskRunner:sortEdgeRuntimeLogsInputList] Finished task specification for sub-workflow
[2026-06-04T19:32:36.041646Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Launching command task: 'fixVcfHeader_sortSomaticSV' from master workflow
[2026-06-04T19:32:36.041965Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Launching command task: 'fixVcfHeader_sortDiploidSV' from master workflow
[2026-06-04T19:32:36.042308Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Launching command task: 'fixVcfHeader_sortCandidateSV' from master workflow
[2026-06-04T19:32:36.043034Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Completed sub-workflow task: 'sortEdgeRuntimeLogsInputList' launched from master workflow
[2026-06-04T19:32:36.045434Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Launching command task: 'sortEdgeRuntimeLogs' from master workflow
[2026-06-04T19:32:36.047657Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskRunner:fixVcfHeader_sortSomaticSV] Task initiated on local node
[2026-06-04T19:32:36.048336Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskRunner:fixVcfHeader_sortCandidateSV] Task initiated on local node
[2026-06-04T19:32:36.048491Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskRunner:fixVcfHeader_sortDiploidSV] Task initiated on local node
[2026-06-04T19:32:36.050618Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskRunner:sortEdgeRuntimeLogs] Task initiated on local node
[2026-06-04T19:32:36.111993Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Completed command task: 'fixVcfHeader_sortSomaticSV' launched from master workflow
[2026-06-04T19:32:36.112062Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Completed command task: 'fixVcfHeader_sortCandidateSV' launched from master workflow
[2026-06-04T19:32:36.112093Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Completed command task: 'sortEdgeRuntimeLogs' launched from master workflow
[2026-06-04T19:32:36.112120Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Completed command task: 'fixVcfHeader_sortDiploidSV' launched from master workflow
[2026-06-04T19:32:36.112422Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Launching sub-workflow task: 'sortCandidateSVInputList' from master workflow
[2026-06-04T19:32:36.112603Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Launching sub-workflow task: 'sortDiploidSVInputList' from master workflow
[2026-06-04T19:32:36.112684Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskRunner:sortCandidateSVInputList] Starting task specification for sub-workflow
[2026-06-04T19:32:36.112966Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskRunner:sortDiploidSVInputList] Starting task specification for sub-workflow
[2026-06-04T19:32:36.113035Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Launching sub-workflow task: 'sortSomaticSVInputList' from master workflow
[2026-06-04T19:32:36.113259Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskRunner:sortCandidateSVInputList] Finished task specification for sub-workflow
[2026-06-04T19:32:36.113370Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskRunner:sortSomaticSVInputList] Starting task specification for sub-workflow
[2026-06-04T19:32:36.113477Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskRunner:sortDiploidSVInputList] Finished task specification for sub-workflow
[2026-06-04T19:32:36.113676Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskRunner:sortSomaticSVInputList] Finished task specification for sub-workflow
[2026-06-04T19:32:36.113817Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Completed sub-workflow task: 'sortCandidateSVInputList' launched from master workflow
[2026-06-04T19:32:36.113848Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Completed sub-workflow task: 'sortDiploidSVInputList' launched from master workflow
[2026-06-04T19:32:36.113866Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Completed sub-workflow task: 'sortSomaticSVInputList' launched from master workflow
[2026-06-04T19:32:36.114051Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Launching command task: 'sort_sortCandidateSV' from master workflow
[2026-06-04T19:32:36.114231Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Launching command task: 'sort_sortDiploidSV' from master workflow
[2026-06-04T19:32:36.114638Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Launching command task: 'sort_sortSomaticSV' from master workflow
[2026-06-04T19:32:36.116964Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskRunner:sort_sortCandidateSV] Task initiated on local node
[2026-06-04T19:32:36.119068Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskRunner:sort_sortDiploidSV] Task initiated on local node
[2026-06-04T19:32:36.120899Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskRunner:sort_sortSomaticSV] Task initiated on local node
[2026-06-04T19:32:36.182669Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Completed command task: 'sort_sortCandidateSV' launched from master workflow
[2026-06-04T19:32:36.182750Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Completed command task: 'sort_sortSomaticSV' launched from master workflow
[2026-06-04T19:32:36.183063Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Launching command task: 'tabix_sortCandidateSV' from master workflow
[2026-06-04T19:32:36.183471Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Launching command task: 'extractSmallIndels' from master workflow
[2026-06-04T19:32:36.184026Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Launching command task: 'tabix_sortSomaticSV' from master workflow
[2026-06-04T19:32:36.186353Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Completed command task: 'sort_sortDiploidSV' launched from master workflow
[2026-06-04T19:32:36.186782Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskRunner:tabix_sortCandidateSV] Task initiated on local node
[2026-06-04T19:32:36.188845Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Launching command task: 'tabix_sortDiploidSV' from master workflow
[2026-06-04T19:32:36.189317Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskRunner:extractSmallIndels] Task initiated on local node
[2026-06-04T19:32:36.191779Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskRunner:tabix_sortSomaticSV] Task initiated on local node
[2026-06-04T19:32:36.192993Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskRunner:tabix_sortDiploidSV] Task initiated on local node
[2026-06-04T19:32:36.221093Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Completed command task: 'tabix_sortCandidateSV' launched from master workflow
[2026-06-04T19:32:36.221174Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Completed command task: 'tabix_sortSomaticSV' launched from master workflow
[2026-06-04T19:32:36.221206Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Completed command task: 'tabix_sortDiploidSV' launched from master workflow
[2026-06-04T19:32:36.228798Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Completed command task: 'extractSmallIndels' launched from master workflow
[2026-06-04T19:32:36.229081Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Launching command task: 'extractSmallIndels_tabix' from master workflow
[2026-06-04T19:32:36.231216Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskRunner:extractSmallIndels_tabix] Task initiated on local node
[2026-06-04T19:32:36.260991Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [TaskManager] Completed command task: 'extractSmallIndels_tabix' launched from master workflow
[2026-06-04T19:32:37.289770Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [WorkflowRunner] Manta workflow successfully completed.
[2026-06-04T19:32:37.289770Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [WorkflowRunner] 
[2026-06-04T19:32:37.289770Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [WorkflowRunner] 	workflow version: 1.6.0
[2026-06-04T19:32:37.289804Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [WorkflowRunner] 
[2026-06-04T19:32:37.289812Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T19:32:37.289817Z] [nf-33dfba5023858dcd0de6adb59a747e2f-f1d64-mch5v] [717_1] [WorkflowRunner] Elapsed time for full workflow: 48 sec