File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/75/3c580e2a0b6aebdf9c2c2d681278e3/.command.log
Size
1020 bytes
Task
NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_GERMLINE:BCFTOOLS_NORM (HCC1395_BL)
Attempt

Content

View in new tab 
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/75/3c580e2a0b6aebdf9c2c2d681278e3/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/3d30fd5b2f3b2a0d5628ca586315d0/HCC1395_BL.haplotyper_rf.gt_corrected.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/75/3c580e2a0b6aebdf9c2c2d681278e3/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b0/5f5680f84d41df973378dce947f488/HCC1395_BL.haplotyper_rf.gt_corrected.vcf.gz.tbi
==> STAGING COMPLETE (5 inputs)

Lines   total/split/joined/realigned/mismatch_removed/dup_removed/skipped:	355/0/0/0/0/0/0
ls: cannot access '*.vcf': No such file or directory
ls: cannot access '*.bcf': No such file or directory
ls: cannot access '*.bcf.gz': No such file or directory
ls: cannot access '*.csi': No such file or directory