cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample Sig_18_Blood --max_event_count 5 -v Sig_18_Blood.tnseq_tumor_only.vcf.gz --contamination Sig_18_Blood.tnseq_tumor_only.contamination_data.tsv --tumor_segments Sig_18_Blood.tnseq_tumor_only.segments --orientation_priors Sig_18_Blood.tnseq_tumor_only.orientation_data.tsv Sig_18_Blood.tnseq_tumor_only.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:174000001, elapsed 0.0s, est remaining 0.5s, peak mem 96MB, user 0.0s, sys 0.2s, output queue size 96
progress 10% @chr2:19000001, elapsed 0.1s, est remaining 0.5s, peak mem 96MB, user 0.2s, sys 0.4s, output queue size 247
progress 15% @chr3:10000001, elapsed 0.1s, est remaining 0.4s, peak mem 96MB, user 0.3s, sys 0.8s, output queue size 83
progress 20% @chr3:173000001, elapsed 0.1s, est remaining 0.4s, peak mem 96MB, user 0.4s, sys 1.0s, output queue size 244
progress 25% @chr4:123000001, elapsed 0.1s, est remaining 0.4s, peak mem 96MB, user 0.5s, sys 1.3s, output queue size 145
progress 30% @chr5:88000001, elapsed 0.2s, est remaining 0.4s, peak mem 96MB, user 0.6s, sys 1.6s, output queue size 98
progress 35% @chr6:82000001, elapsed 0.2s, est remaining 0.3s, peak mem 96MB, user 0.6s, sys 2.0s, output queue size 260
progress 40% @chr7:50000001, elapsed 0.2s, est remaining 0.3s, peak mem 97MB, user 0.7s, sys 2.2s, output queue size 421
progress 45% @chr8:73000001, elapsed 0.2s, est remaining 0.3s, peak mem 97MB, user 0.8s, sys 2.6s, output queue size 136
progress 50% @chr9:82000001, elapsed 0.3s, est remaining 0.3s, peak mem 97MB, user 0.9s, sys 2.8s, output queue size 228
progress 55% @chr10:114000001, elapsed 0.3s, est remaining 0.2s, peak mem 97MB, user 1.1s, sys 3.2s, output queue size 118
progress 60% @chr11:133000001, elapsed 0.3s, est remaining 0.2s, peak mem 97MB, user 1.1s, sys 3.5s, output queue size 280
progress 65% @chr13:20000001, elapsed 0.3s, est remaining 0.2s, peak mem 97MB, user 1.2s, sys 3.6s, output queue size 350
progress 70% @chr14:55000001, elapsed 0.3s, est remaining 0.1s, peak mem 97MB, user 1.5s, sys 3.8s, output queue size 511
progress 75% @chr16:26000001, elapsed 0.4s, est remaining 0.1s, peak mem 97MB, user 1.6s, sys 4.0s, output queue size 673
progress 80% @chr18:5000001, elapsed 0.4s, est remaining 0.1s, peak mem 97MB, user 1.7s, sys 4.3s, output queue size 835
progress 85% @chr19:31000001, elapsed 0.4s, est remaining 0.1s, peak mem 98MB, user 1.8s, sys 4.5s, output queue size 997
progress 90% @chrX:31000001, elapsed 0.4s, est remaining 0.0s, peak mem 100MB, user 2.0s, sys 4.8s, output queue size 642
progress 95% @chrY:35000001, elapsed 0.5s, est remaining 0.0s, peak mem 100MB, user 2.1s, sys 5.0s, output queue size 804
progress 100% @HLA-DRB1*15:01:01:02:1, elapsed 0.5s, est remaining 0.0s, peak mem 108MB, user 2.3s, sys 5.6s, output queue size 1845
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 32 max 32
algo: TNfilter
license: sentieon:TNhaplotyper=32
input file size: 66383
output file size: 50065
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 816 calls 0.007 user 0.000 sys 0.014 real
"predict_filter": 272 calls 0.010 user 0.001 sys 0.016 real
advance: 3219322 calls 0.494 user 2.450 sys 5.111 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.005 user 0.003 sys 0.593 real
fetch_ref: 816 calls 0.011 user 0.000 sys 0.016 real
idle: 18532 calls 0.284 user 0.116 sys 40.236 real
init: 1 calls 0.140 user 0.044 sys 0.280 real
overall: 113336320 mem 3.285 user 6.477 sys 1.875 real