Clear
Retried
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNHAPLOTYPER2 (HCC1395_BL) 25s 1s 2s 21s 384.8 MB 628% 682.2 MB 366.8 KB 0 bytes 8.0 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_PROBE_COUNTS (HCC1395_BL) 10s 7s 0s 2s 10.2 MB 103% 161.9 MB 2.1 MB 0 bytes 644.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_QC_SEX_ESTIMATION:BAM_ESTIMATE_SEX (HCC1395_BL) 7s 1s - - 3.2 MB 113% 2.1 MB 108.4 KB 0 bytes 112.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:SAMTOOLS_STATS (HCC1395_BL) 15s 1s 4s 10s 9.1 MB 114% 155.6 MB 125.8 KB 0 bytes 128.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:GERMLINE_CNV (HCC1395_BL) 33s 9s 14s 9s 405.9 MB 184% 3.2 GB 187.7 KB 0 bytes 196.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:MOSDEPTH (HCC1395_BL) 40s 2s 25s 13s 1.9 GB 106% 167.0 MB 6.1 MB 155.4 MB 6.2 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_CONTAMINATION_ANALYSIS:CONPAIR_PILEUP (HCC1395_BL) 43s 30s 3s 9s 346.8 MB 332% 147.5 MB 1.3 MB 0 bytes 1.4 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_ALLELE_COUNTS (HCC1395_BL) 10s 7s 0s 2s 22.4 MB 226% 187.6 MB 18.9 MB 0 bytes 5.1 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SOMATIC_CNV_CALLING:SOMA_CNV_NORMALIZE (HCC1395_BL) 5s 1s 1s 2s 215.0 MB 2031% 60.7 MB 197.8 KB 0 bytes 208.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:MERGE_SENTIEON_HAPLOTYPER_VCFS (HCC1395_BL) 19s 15s 2s 2s 294.8 MB 325% 95.9 MB 734.6 KB 0 bytes 740.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNFILTER (HCC1395_BL) 19s 4s 2s 12s 475.8 MB 5644% 10.4 MB 316.3 KB 0 bytes 25.4 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:DIFF_DV_SENTIEON (HCC1395_BL) 6s 5s 0s 0s 18.7 MB 4283% 8.3 MB 18.1 KB 0 bytes 28.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:MERGE_FORCECALLED (HCC1395_BL) 4s 2s 0s 1s 3.4 MB 9713% 1.1 MB 799.7 KB 0 bytes 88.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_NORM (HCC1395_BL) 19s 2s 7s 9s 34.1 MB 287% 3.0 GB 204.6 KB 0 bytes 216.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_SORT (HCC1395_BL) 3s 1s - - 21.3 MB 6467% 568.7 KB 455.9 KB 0 bytes 468.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:SPLIT_MULTIALLELIC (HCC1395_BL) 19s 2s 7s 9s 34.0 MB 288% 3.0 GB 194.9 KB 0 bytes 204.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:SENTIEON_HAPLOTYPER_RF_FILTER (HCC1395_BL) 12s 5s 2s 4s 1.7 GB 804% 81.2 MB 53.5 KB 0 bytes 64.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:VCF_ANNOTATE_INDEL_ENTROPY:INDEL_ENTROPY_ANNOTATION (HCC1395_BL) 4s 2s 0s 1s 15.8 MB 4504% 31.2 MB 328.5 KB 0 bytes 336.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:VCF_ANNOTATE_INDEL_ENTROPY:BCFTOOLS_QUERY (HCC1395_BL) 7s 5s 0s 1s 32.8 MB 4464% 164.3 KB 1.3 KB 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:GT_CORRECTION (HCC1395_BL) 11s 6s 2s 2s 1.7 GB 817% 68.6 MB 40.3 KB 0 bytes 56.0 KB 1
30 items found |
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