cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta -t 12 --interval germline_rescue_targets.bed -i HCC1395_BL.recalibrated.bam --algo Haplotyper --given HCC1395_BL.dv_only_sites.vcf.gz --emit_mode variant HCC1395_BL.forcecall.unfiltered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr2:29609953, elapsed 0.0s, est remaining 0.6s, peak mem 49MB, user 0.0s, sys 0.0s, output queue size 53
progress 10% @chr2:214809401, elapsed 0.0s, est remaining 0.3s, peak mem 49MB, user 0.0s, sys 0.0s, output queue size 193
progress 15% @chr3:142538482, elapsed 0.0s, est remaining 0.2s, peak mem 49MB, user 0.0s, sys 0.0s, output queue size 404
progress 20% @chr5:112818952, elapsed 0.0s, est remaining 0.2s, peak mem 49MB, user 0.0s, sys 0.0s, output queue size 460
progress 25% @chr7:5999106, elapsed 0.1s, est remaining 0.2s, peak mem 49MB, user 0.0s, sys 0.0s, output queue size 594
progress 30% @chr7:55204953, elapsed 0.1s, est remaining 0.1s, peak mem 49MB, user 0.0s, sys 0.0s, output queue size 631
progress 35% @chr9:21970761, elapsed 0.1s, est remaining 0.1s, peak mem 49MB, user 0.1s, sys 0.0s, output queue size 771
progress 40% @chr10:43111197, elapsed 0.1s, est remaining 0.1s, peak mem 49MB, user 0.1s, sys 0.0s, output queue size 915
progress 45% @chr11:64809650, elapsed 0.1s, est remaining 0.1s, peak mem 49MB, user 0.1s, sys 0.0s, output queue size 1041
progress 50% @chr12:11770919, elapsed 0.1s, est remaining 0.1s, peak mem 49MB, user 0.1s, sys 0.0s, output queue size 1213
progress 55% @chr12:11796959, elapsed 0.1s, est remaining 0.1s, peak mem 49MB, user 0.1s, sys 0.0s, output queue size 1226
progress 60% @chr12:11855326, elapsed 0.1s, est remaining 0.0s, peak mem 49MB, user 0.1s, sys 0.0s, output queue size 1243
progress 65% @chr12:11890909, elapsed 0.1s, est remaining 0.0s, peak mem 49MB, user 0.1s, sys 0.0s, output queue size 1309
progress 70% @chr14:65075125, elapsed 0.1s, est remaining 0.0s, peak mem 49MB, user 0.1s, sys 0.0s, output queue size 1481
progress 75% @chr15:89316396, elapsed 0.1s, est remaining 0.0s, peak mem 51MB, user 0.1s, sys 0.0s, output queue size 1645
progress 80% @chr17:7682079, elapsed 0.1s, est remaining 0.0s, peak mem 52MB, user 0.1s, sys 0.0s, output queue size 519
progress 85% @chr17:39532155, elapsed 0.1s, est remaining 0.0s, peak mem 52MB, user 0.1s, sys 0.1s, output queue size 699
progress 90% @chr17:61683205, elapsed 0.1s, est remaining 0.0s, peak mem 52MB, user 0.1s, sys 0.1s, output queue size 799
progress 95% @chr19:52190038, elapsed 0.1s, est remaining 0.0s, peak mem 52MB, user 0.1s, sys 0.1s, output queue size 986
progress 100% @chr21:34787802, elapsed 0.2s, est remaining 0.0s, peak mem 113MB, user 0.2s, sys 0.2s, output queue size 124
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 12 max 192
algo: Haplotyper
license: sentieon:Haplotyper=12
input file size: 163002590
output file size: 22292
reads: 1955548
contig: 2712 intervals 851273 bases
active: 5761 calls 0.000 user 0.000 sys 0.002 real
advance: 3049 calls 0.106 user 0.067 sys 0.193 real
calc: 5761 calls 0.028 user 0.007 sys 0.031 real
clip_region: 8 calls 0.000 user 0.000 sys 0.002 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.001 user 0.000 sys 0.175 real
fetch: 5761 calls 0.016 user 0.008 sys 0.014 real
fetch_ref: 5769 calls 0.000 user 0.001 sys 0.024 real
fetch_region: 8 calls 0.000 user 0.000 sys 0.002 real
idle: 24 calls 0.007 user 0.002 sys 12.763 real
init: 1 calls 0.002 user 0.001 sys 0.002 real
region: 5761 calls 0.000 user 0.000 sys 0.006 real
tracker: 5761 calls 0.001 user 0.002 sys 0.007 real
overall: 118943744 mem 0.349 user 0.311 sys 1.227 real
ls: cannot access '*.g.vcf.gz': No such file or directory
ls: cannot access '*.g.vcf.gz.tbi': No such file or directory