.command.log - Workdir - NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_EXPORT (HCC1395_tumor_vs_HCC1395_BL)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/217922a4fdf957a67e3507f6da1256/.command.log
Size: 1.3 KB
Task: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_EXPORT (HCC1395_tumor_vs_HCC1395_BL)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/217922a4fdf957a67e3507f6da1256/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fa/4f02aa5d57335cab928ab1a7bf0890/HCC1395_tumor.recalibrated.somatic.call.cns
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/217922a4fdf957a67e3507f6da1256/.command.run
==> STAGING COMPLETE (3 inputs)

Matplotlib created a temporary config/cache directory at /tmp/matplotlib-xn7fxbv8 because the default path (/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
Fontconfig error: No writable cache directories
No chrX found in sample; is the input truncated?
Treating sample HCC1395_tumor.recalibrated.somatic.call as male
Wrote HCC1395_tumor_vs_HCC1395_BL.cnvcall.vcf
Matplotlib created a temporary config/cache directory at /tmp/matplotlib-_dv7luie because the default path (/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
Fontconfig error: No writable cache directories