.command.log - Workdir - NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_GERMLINE:BCFTOOLS_NORM (HCC1395_BL)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/3be19d7c1a6a003695aa27cb395d5a/.command.log
Size: 1020 bytes
Task: NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_GERMLINE:BCFTOOLS_NORM (HCC1395_BL)
Attempt

Content

  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/3be19d7c1a6a003695aa27cb395d5a/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/3be19d7c1a6a003695aa27cb395d5a/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/47a94c59afacb3d766174ebe15631a/HCC1395_BL.haplotyper_rf.gt_corrected.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/dd1122f507d01b3efb39e491acc61b/HCC1395_BL.haplotyper_rf.gt_corrected.vcf.gz.tbi
==> STAGING COMPLETE (5 inputs)

Lines   total/split/joined/realigned/mismatch_removed/dup_removed/skipped:	354/0/0/0/0/0/0
ls: cannot access '*.vcf': No such file or directory
ls: cannot access '*.bcf': No such file or directory
ls: cannot access '*.bcf.gz': No such file or directory
ls: cannot access '*.csi': No such file or directory