File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fa/2a2b5728a0e3c26d329496b186fdee/.command.log
Size
1.1 KB
Task
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:DIFF_DV_SENTIEON (Sig_18_Blood)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fa/2a2b5728a0e3c26d329496b186fdee/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/37748d1d447521527d5a2ca5fe00ce/Sig_18_Blood.dv_rescue.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fa/2a2b5728a0e3c26d329496b186fdee/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/37748d1d447521527d5a2ca5fe00ce/Sig_18_Blood.dv_rescue.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/0041c04142afabaaad8364b297f81c/Sig_18_Blood.haplotyper.unfiltered.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/0041c04142afabaaad8364b297f81c/Sig_18_Blood.haplotyper.unfiltered.vcf.gz.tbi
==> STAGING COMPLETE (6 inputs)

INFO: Loading Sentieon variant positions...
INFO:   395 variant positions in Sentieon VCF
INFO: Scanning DeepVariant VCF for novel INDEL positions...
INFO:   0 PASS INDELs in DeepVariant VCF
INFO:   0 novel positions (not in Sentieon) -> written to Sig_18_Blood.dv_only_sites.vcf.gz