File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7f/bc52cc4fd2467c8c9a281a19db0d3f/.command.log
Size
780 bytes
Task
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:VCF_ANNOTATE_INDEL_ENTROPY:INDEL_ENTROPY_ANNOTATION (HCC1395_BL)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7f/bc52cc4fd2467c8c9a281a19db0d3f/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7f/bc52cc4fd2467c8c9a281a19db0d3f/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/0adcb3be01998b8283865453e723b9/HCC1395_BL.haplotyper.split.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/28/0da333551324976cd049407143eec1/HCC1395_BL.mpileup.gz
==> STAGING COMPLETE (4 inputs)

Parsing mpileup: HCC1395_BL.mpileup.gz
Found 20 positions with indel observations
Annotating VCF: HCC1395_BL.haplotyper.split.vcf.gz
[E::idx_find_and_load] Could not retrieve index file for 'HCC1395_BL.haplotyper.split.vcf.gz'
Output written to: HCC1395_BL.entropy.vcf